BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915451
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23330.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 226 7e-59
> AT4G23330.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1);
Has 63 Blast hits to 55 proteins in 14 species:
Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants -
62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:12192115-12195019 FORWARD LENGTH=1108
Length=1108
Score = 226 bits (122), Expect = 7e-59
Identities = 188/218 (86%), Gaps = 11/218 (5%)
Strand=Plus/Plus
Query 1 ATGGATGCCGAAGCTGAAACTGATGTGGTTCGGCCGGTGGAGGACA-ATTCGTCGGAGGA 59
|||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||| |||
Sbjct 22 ATGGATGCCGGAGCTGAAATTGATGTGGTTCGGCCGGTGGAGG-CAGATTCGGCGGCGGA 80
Query 60 AACTGGTCCGGAACAAGATCACGGAGGAAGA-C-CAG----AG-C--TGAAACAAGGAGA 110
|| | ||||||||||||| |||| ||||||| | || | | |||| ||||| ||
Sbjct 81 AATTAGTCCGGAACAAGACCACGAAGGAAGATCGGAGCCTTCGTCGTTGAACCAAGGGGA 140
Query 111 GATTTTGAGAACCCTTGCAACGGTTGAGAAGGATTCGCAGGCAATCGCGGAAAGCTTTTC 170
|||||| | ||| ||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 141 GATTTTAAAAACACTTGCTACGGTGGAGAAGGATTCGCAGGCAATCGCGGAGAGCTTTTC 200
Query 171 GTCTCTCTTTGTTTCCCTCCGATCAACTCTCTCTGAGG 208
|||||||||||||||||||||||||||||| |||||||
Sbjct 201 GTCTCTCTTTGTTTCCCTCCGATCAACTCTTTCTGAGG 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5