BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915456
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46200.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1751 0.0
> AT5G46200.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:18727802-18730331 REVERSE LENGTH=1559
Length=1559
Score = 1751 bits (948), Expect = 0.0
Identities = 1144/1236 (93%), Gaps = 24/1236 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCTTTGGCTGAAGTTATTCTTGATAAGTCTAATATACCTCAATGTTATCGCT 60
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 85 ATGGCTTCTCTTTGGCTGAAGTTAATCTCCATAAGTCTAATATACCTCAATGTTATCGCT 144
Query 61 AAATCAACTCCGCATCAAGAAACCGAATTCGAATGCGTCTCTATAGACAAACAATCTGCA 120
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 145 AAATCAACTCCGCATCAAGAAAGCGAATTCGAATGTGTCTCTATAGACAAACAATCTGCA 204
Query 121 TTACAACATCCTCTAATGAAGAATCATCGTATACAGACTAGACCAAGTCGAGAGCTTTTA 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 205 CTACAACATCCTCTAATGAAGAATCATCGCATACAGACTAGACCAAGTCGAGAGCTTCTA 264
Query 181 TCAATACTGTCTACGTCCAAAGATGACAGAATTAGAAAGATTGATTTGAAGGGATCAGAA 240
|||||||| ||||||||||| | | ||| | | ||| |||||||||||||||||||||||
Sbjct 265 TCAATACTCTCTACGTCCAATGGTAACATACTCAGAGAGATTGATTTGAAGGGATCAGAA 324
Query 241 GAATGTCCAAAGGGACAAGTACCTATCCATAAACCAAAAACCAA--T-----A-A-TCTT 291
||||||||||||||||||||||| || ||||||| ||||||||| | | | ||||
Sbjct 325 GAATGTCCAAAGGGACAAGTACCGATTCATAAACAAAAAACCAACTTAACCAATAGTCTT 384
Query 292 ATTCATCCCCAACAAATTCCA-AGAGCAGGCCGTCTCCTGAAACAAACTCGCAGTCGCAG 350
|||||||||||||||||| || |||||||||||| ||||||||| || ||||||||
Sbjct 385 ATTCATCCCCAACAAATT-CATAGAGCAGGCCGTATCCTGAAAC-AA-----AGTCGCAG 437
Query 351 GGTtaaaaagaagaaaaagaacaatcgacgtaaaaaagataaaaataaaCT--T-ATCAC 407
|| |||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
Sbjct 438 GGATAAAAAGAAGAAAAAGAACAATCGACGTAAAAAAAATAAAAATAAACTCATGATCCC 497
Query 408 TTCTGCAGTGTTGTCTCaaaaaaaTAAGAACCCT-ATCCACCGGCCAAAATTATTTACAG 466
||||||| ||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 498 TTCTGCATTGTTGTCTCAAAAAAATAAGATTCCTCA-CCACCAGCCAAAATTATTTACAG 556
Query 467 AGACTCATCTACATTATGCAATTGTTAGGACATTTGAAAATACGACaaaaaaaTGGCGTG 526
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 557 AGACACATCTACATTATGCAATTGTTAGGACATTTGAAAACACGACAAAGAAATGGCGTG 616
Query 527 GAGCACAAGCATTGTTCAGTATTAACAAGCCCCGAGTGGTGCAAAATCAATTTAGTAAGG 586
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GAGCACAAGCATTGTTCAATATTAACAAGCCCCGAGTGGTGCAAAATCAATTTAGTAAGG 676
Query 587 CTTGGATTTGGCTTAATTACATACAAGGAAGCGTAATGAGCAGCATCCAGTTTGGTTGGG 646
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 677 CTTGGATTTGGCTTAATTACATTCAAGGAAGCTTAATGAGCAGCATCCAGTTTGGTTGGG 736
Query 647 CTGTGCATACGAATTTATATCCAGACGATCGTCCAAGACTAACCACGTTTTGGATGTCAG 706
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 737 CTGTGCATACGAATTTATATTCAGACGATCGTCCAAGACTAACTACGTTTTGGATGTCAG 796
Query 707 ATAACCATCAAAAAGGATGTTACAATGCGTTATGTCCAGGAGGTTATGTTCAAATTCATA 766
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 ATCAGCATCCAAAAGGATGTTACAATGCGTTATGTCCAGGAGGTTATGTTCAAATTCATA 856
Query 767 AATCAATCTACCCCGGTTTGGTTTATGATAAAGTCAATGTTCCAGTAGGAAAACAAAACA 826
|||||||||||||||||||||| ||||||||||| |||| || || ||||||||| ||||
Sbjct 857 AATCAATCTACCCCGGTTTGGTGTATGATAAAGTTAATGCTCTAGGAGGAAAACAGAACA 916
Query 827 CTGTCCATCTTTCTGTTGCTGAGGATCCAGTGACCAAAAATTGGGTATTGACGGTAGGAT 886
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 917 CTGTCCATCTTTCTGTTGCTGAGGATCCAGTGACCAAAAATTGGGTATTGACGATAGGAT 976
Query 887 CCATAATGATAGGGTATTGGCCACGTCAAAGTCACATGGCAGAAGGAGCTTCTGAAGTAT 946
||||||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 977 CCATAATGATAGGCTATTGGCCACGTCAAAGTCAGATGGTAGATGGAGCTTCTGAAGTAT 1036
Query 947 ATTTCGGTGGATTTGCAGGAATCAGTGAATTGTCTCAACCCACGACAAGCCCACCTATGG 1006
| ||||||||||||||||||| || || || ||||||||| |||||||||||||| ||||
Sbjct 1037 ACTTCGGTGGATTTGCAGGAAACACTGCATCGTCTCAACCGACGACAAGCCCACCAATGG 1096
Query 1007 GAACTGGAGAGTTTCCGACAAAAGATCTGAGTCGGTCTTGTTTCATGAAACAACTTAAAT 1066
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1097 GAACTGGAGAGTTTCCGACAAAAGATTTGAGTCGGTCTTGTTTCATGAAACAGCTTAAAT 1156
Query 1067 ATGTTCTTTCGGATTATACAGTTGTGGATATCAATCCCAACGAGGTAGAAGATTATGTGG 1126
||||||||||||||||| ||||||||||||| ||| |||||||||||||| | |||||||
Sbjct 1157 ATGTTCTTTCGGATTATTCAGTTGTGGATATTAATGCCAACGAGGTAGAACAGTATGTGG 1216
Query 1127 ATAATCGTAAGTGTTATGGTTTAATGTTT-TATAAGTATGTAGATTATGATTCTAGAGAA 1185
||| |||||||||||||||| |||||||| | |||||||||||||||||||| |||||
Sbjct 1217 ATAGTCGTAAGTGTTATGGTGTAATGTTTCTC-AAGTATGTAGATTATGATTCCAGAGAG 1275
Query 1186 ACTCTTACGTTTGGAGGACCTGGTGGACAATGTTGA 1221
||||||||||||||||||||||||||||||||||||
Sbjct 1276 ACTCTTACGTTTGGAGGACCTGGTGGACAATGTTGA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5