BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915481
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 ... 610 8e-174
AT3G23610.3 | Symbols: DSPTP1 | dual specificity protein phosph... 185 6e-46
AT3G05120.1 | Symbols: ATGID1A, GID1A | alpha/beta-Hydrolases s... 56.5 5e-07
> AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein
8 | chr1:18416480-18420047 FORWARD LENGTH=2570
Length=2570
Score = 610 bits (330), Expect = 8e-174
Identities = 399/428 (93%), Gaps = 21/428 (5%)
Strand=Plus/Plus
Query 314 TGAGTAGAGGATCTGGATTTGTCGCATTTTCAACTCCTGAGGAAGCATCTAGAGCTATTA 373
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1354 TGAGTAGAGGATCTGGATTTGTCGCATTTTCAACTCCTGAGGAAGCAACTAGAGCTATTA 1413
Query 374 CAGAGATGAATGGAAAAATGATCGTTACCAAACCTCTATATGTTGCTCTTGCGCAGCGGA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CAGAGATGAATGGAAAAATGATCGTTACCAAACCTCTATATGTTGCTCTTGCGCAGCGGA 1473
Query 434 AAGAAGACTGCAAAGC-----T--AGG-------TT-ACAGATGAGGCCGGTCAATATGC 478
|||||||| ||||||| | ||| || |||||||||||||||||||||||
Sbjct 1474 AAGAAGACCGCAAAGCTAGGTTACAGGCTCAATTTTCACAGATGAGGCCGGTCAATATGC 1533
Query 479 CACCTGCGGTTGGTCCTAGGATGCAAATGTATCCACCAGGTGGTCCACCAATGGGTCAGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 CACCTGCGGTTGGTCCTAGGATGCAAATGTATCCACCAGGTGGTCCACCAATGGGTCAGC 1593
Query 539 AACTCTTCTATGGTCAAGGACCTCCTGCTATGATTCCTCCTCAGCCTGGATTCGGATATC 598
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1594 AACTCTTCTATGGTCAAGGGCCTCCTGCTATGATTCCTC---AGCCTGGATTCGGATATC 1650
Query 599 AACAACAGCTTGTACCCGGTATGAGACCTGGTGGGTCTCCAATGCCAAACTTCTTCATGC 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 AACAACAGCTTGTACCGGGTATGAGACCTGGTGGGTCTCCAATGCCAAACTTCTTCATGC 1710
Query 659 CTATGATgcaacaaggccaacaacaacaacagcagcaacagcagcagcagcagcagTATG 718
||||||||||||||||||| ||||| ||||||||||||||||||||||||| | | ||
Sbjct 1711 CTATGATGCAACAAGGCCAGCAACAGCAACAGCAGCAACAGCAGCAGCAGC-G-ACC-TG 1767
Query 719 GTGGTGGT 726
||||||||
Sbjct 1768 GTGGTGGT 1775
Score = 529 bits (286), Expect = 2e-149
Identities = 303/311 (97%), Gaps = 1/311 (0%)
Strand=Plus/Plus
Query 717 TGGTGGTGGTGTGCATCATCGTGACTCGCCTGCTTCTCAATCTGTTCCTATTGGAGCTTT 776
||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 1931 TGGTGGTGGTGTGCATCATCGTGACTCGCCTACTTCTCAACCTGTTCCTATTGTAGCTTT 1990
Query 777 GGCTACACAACTTGCAAATGCAGCTCCAGAGCAACAGAGAACGATGCTTGGTGAGAATCT 836
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 GGCTACACGGCTTGCGAATGCAGCTCCAGAGCAACAGAGAACGATGCTTGGTGAGAATCT 2050
Query 837 ATACCCGCTTGTGGAGCAGCTGGAGCCAGAATCCGCAGCTAAAGTCACGGGAATGCTTCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 ATACCCGCTTGTGGAGCAGCTGGAGCCAGAATCCGCAGCTAAAGTCACGGGAATGCTTCT 2110
Query 897 TGAAATGGACCAAACCGAAGTACTTCACTTGCTGGAATCACCAGAGGCACTTAAAGCTAA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 TGAAATGGACCAAACCGAAGTACTTCACTTGCTGGAATCACCAGAGGCACTTAAAGCTAA 2170
Query 957 AGTTACAGAAGCAATGGATGTTCTGAGGAGTGTAGCACAGCAGCAAGTGG-TGGTGCAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2171 AGTTACAGAAGCAATGGATGTTCTGAGGAGTGTAGCACAGCAGCAAGCGGGTGGTGCAGC 2230
Query 1016 TGATCAGTTAG 1026
|||||||||||
Sbjct 2231 TGATCAGTTAG 2241
> AT3G23610.3 | Symbols: DSPTP1 | dual specificity protein phosphatase
1 | chr3:8478122-8479841 FORWARD LENGTH=1035
Length=1035
Score = 185 bits (100), Expect = 6e-46
Identities = 147/168 (88%), Gaps = 9/168 (5%)
Strand=Plus/Plus
Query 122 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCGTCGTC---------GTTACCTGGAA 172
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 160 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCATCTTCTTCGTTACCAGGAA 219
Query 173 TAGATAAGTATAACGAAAAGGTGAAGAATCAGATACAAGCACTTGTTCGTGTTATTAAGG 232
|||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 220 TAGAAAAGTATAATGAAAAGGTGAAGAATCAGATACAAGCTCTTGTTCGTGTTATTAAAG 279
Query 233 TTGCTCGCACCTATAGAGATGACAATGTCCCTTCTCTAATCGAAGAGG 280
||||||| ||||||||||| |||||||||||||| || || ||| |||
Sbjct 280 TTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGG 327
> AT3G05120.1 | Symbols: ATGID1A, GID1A | alpha/beta-Hydrolases
superfamily protein | chr3:1430471-1432778 FORWARD LENGTH=1740
Length=1740
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 19 TCTACTCTCAATAAGATTAACTTCATCGCTCGC 51
||| |||||||||||||||||||||||||||||
Sbjct 250 TCTGCTCTCAATAAGATTAACTTCATCGCTCGC 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5