BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915504

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / trans...  73.1    7e-13


> AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / transmembrane 
family protein | chr5:16285711-16287793 FORWARD LENGTH=1272
Length=1272

 Score = 73.1 bits (39),  Expect = 7e-13
 Identities = 43/45 (96%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  34   AGCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTTCAA  78
            ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  680  AGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTTCAA  724



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7595504001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5