BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915521
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45680.1 | Symbols: ATFKBP13, FKBP13 | FK506-binding protein... 1009 0.0
> AT5G45680.1 | Symbols: ATFKBP13, FKBP13 | FK506-binding protein
13 | chr5:18530880-18532337 FORWARD LENGTH=850
Length=850
Score = 1009 bits (546), Expect = 0.0
Identities = 602/629 (96%), Gaps = 4/629 (1%)
Strand=Plus/Plus
Query 1 ATGAGCTCCTTGGGATTTTCAGTTGGGACTTGTTCTCCTCCAAGTGAGCAAAGAAAATGC 60
|||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 15 ATGAGCTCCTTGGGGTTTTCAGTTGGAACTTGTTCTCCTCCAAGTGAGAAAAGAAAATGC 74
Query 61 AGATTTCTTGTGAATAATAGCTTAAACAAAGCAGAGACTATTAACTTGAGAAACACGCAA 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 75 AGATTTCTTGTGAATAATAGCTTAAACAAAGCAGAGGCTATTAACTTGAGAAACAAGCAA 134
Query 121 AAAGCTTCTTATGATCCTGAGTTAAGTCTTGTCCAATTATCCTCATGTGGTAGAAGAGAA 180
|||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 135 AAAGTTTCTTCTGATCCTGAGTTAAGTTTTGCCCAATTATCCTCATGTGGTAGAAGAGAA 194
Query 181 GCAATTCTTGGTTTTGGTTTCTCTATTGGCTTGCTTGATAATGTTTCCGCATTAGCCGAA 240
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 195 GCAATTATTGGTTTTGGTTTCTCTATTGGCTTGCTTGATAATGTTTCTGCATTAGCCGAA 254
Query 241 ACAACTTCTTGTGAATTCTCTGTATCTCCTTCTGGTCTTGCTTTCTGTGATAAAGTTGTT 300
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 255 ACAACTTCTTGTGAATTCTCTGTGTCTCCTTCTGGTCTTGCTTTTTGTGATAAAGTTGTT 314
Query 301 GGTTATGGTCCTGAAGCTGTCAAAGGGCAACTAATCAAGGCACATTATGTAGGGAAGTTG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 315 GGTTATGGTCCTGAAGCTGTTAAAGGGCAACTAATCAAGGCACATTATGTAGGGAAGTTG 374
Query 361 GAGAATGGGAAAGTCTTTGATAGTAGCTATAATCGA-GGAAAGCCTCTAACATTT-CGAA 418
|||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| ||||
Sbjct 375 GAGAATGGGAAAGTCTTTGATAGTAGCTATAATCGAGGGAAA-CCTCTTAC-TTTCCGAA 432
Query 419 TAGGTGTTGGCGAGGTGATAAGAGGTTGGGACCAAGGAATCCTTGGCTCTGATGGAATTC 478
| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 433 TTGGTGTTGGTGAGGTGATAAAAGGTTGGGATCAAGGAATCCTTGGCTCTGATGGAATTC 492
Query 479 CTCCTATGCTTACCGGTGGGAAACGAACATTGAAGATTCCTCCAGAACTCGCATATGGTG 538
||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 493 CTCCTATGCTTACTGGTGGGAAACGAACATTGAGGATTCCTCCAGAACTCGCGTATGGTG 552
Query 539 ATCGAGGCGCAGGTTGCAAAGGAGGCTCATGCCTTATTCCTCCAGCTTCGGTTCTTCTCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ATCGAGGCGCAGGTTGCAAAGGAGGCTCATGCCTTATTCCTCCAGCTTCGGTTCTTCTCT 612
Query 599 TTGACATTGAGTTCATAGGTAAAGCTTGA 627
|||||||||||| ||||||||||||||||
Sbjct 613 TTGACATTGAGTACATAGGTAAAGCTTGA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5