BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915539 Length=2250 Score E Sequences producing significant alignments: (Bits) Value AT5G45530.1 | Symbols: | Protein of unknown function (DUF594) ... 1877 0.0 > AT5G45530.1 | Symbols: | Protein of unknown function (DUF594) | chr5:18454316-18457277 REVERSE LENGTH=2452 Length=2452 Score = 1877 bits (1016), Expect = 0.0 Identities = 1527/1771 (86%), Gaps = 46/1771 (3%) Strand=Plus/Plus Query 497 GACCCCCGAAACTCGTTAGACCGGACCGAGATTTAACCGATCTCGAAATCGTTCAATACG 556 ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 702 GACCCCCTACACTCGTTAAACCGGACCGAGATTTAACCGATCTCGAAATCGTTCAATACG 761 Query 557 GCTACAAATTCTTCAACACTTTCAAAGGTCTTGTTGTTGATCTTGTTTTCAGTT-CTAGT 615 | | ||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 762 GTTTCAAATTCTTCAACACTTTCAAAGGTCTTGTTGTTGATCTCATTTTCAGTTTCC-GT 820 Query 616 GAGCGAGACGAAAGCAGAGATTTCTTCAATGAGTTGAAACCGGGAGAAGCACTAAGGATT 675 |||||||||||||| |||||||||||||| ||||||||||| |||||||| || | ||| Sbjct 821 GAGCGAGACGAAAGTAGAGATTTCTTCAAAGAGTTGAAACCTGGAGAAGCTCTTCGAATT 880 Query 676 ATTGAATCCGAGCTTGATTTTCTATACGAATTGATGTTTACTAAAACTGCGATTCTTCAC 735 || ||| ||||||| | |||||| ||||||| ||||| ||| ||||| || |||||||| Sbjct 881 ATCGAAACCGAGCTCGGTTTTCTTTACGAATCGATGTATACCAAAACCGCAATTCTTCAT 940 Query 736 AC-GATAACCGGTACTCTGTTTCGGTTAATTGCGTTTGGATCACTTATTTCTTCCTTCTT 794 || | || |||||||||||||||||||||| | |||||||||||| ||||||||||||| Sbjct 941 ACCGG-AATCGGTACTCTGTTTCGGTTAATTTCCTTTGGATCACTTCTTTCTTCCTTCTT 999 Query 795 TGTCTTCCATCGTAGGCCGCTTAAGTCTGAGGAATTTCATGGAGCAGACATTGTGATTAC 854 ||||||||||||||| ||||| ||||| || || |||||||||||||| | |||||||| Sbjct 1000 TGTCTTCCATCGTAGACCGCTAAAGTCCGAAGATTTTCATGGAGCAGATGTGGTGATTAC 1059 Query 855 TTACACATTGTTCATCGTTGGTATCGCGCTTGATCTC-CTGTCAATAGTCATGTTCTTGT 913 |||| ||||| || |||||||||||||||||||| | |||||| ||||| |||||| Sbjct 1060 TTACGTTTTGTTTATAGTTGGTATCGCGCTTGATCTTGC-GTCAATGGTCATTTTCTTGC 1118 Query 914 TCTCGGATTGGACATAT-GCGGTATTGAGTAAGCTTAAGGATGATCCAGAGGAATATAAT 972 ||||||||||||||| | || ||| | || || ||||||||||||||||||||| | | | Sbjct 1119 TCTCGGATTGGACAT-TCGCAGTACTAAGAAACCTTAAGGATGATCCAGAGGAAAAGAGT 1177 Query 973 AGTTTTATCGACTCTTTACTCAATTGGTTTCTCGCGTTTAGGAAACTGCGTTGTAAGAAG 1032 | || ||||||||||||| |||| |||||||||| ||||||||||| ||||| |||||| Sbjct 1178 ACTTCTATCGACTCTTTATTCAACTGGTTTCTCGAGTTTAGGAAACCCCGTTGGAAGAAG 1237 Query 1033 CATACATGCAATGGAAACCATACCCACGAGGTGCTCTCGACGGGGTTTTGGT-CACGGAG 1091 ||||||||||| |||||||| ||||||||||| |||||||||||||||| | |||| || Sbjct 1238 CATACATGCAACGGAAACCAAACCCACGAGGTACTCTCGACGGGGTTTTT-TACACGTAG 1296 Query 1092 ATGGTCAGGCATGATCTACGGATTCAATTTCATCGGGTTTTGT-TTGAAAGCCAAAGTTT 1150 ||||||||||| |||||||||||| || ||||||||||||||| || ||||||||||||| Sbjct 1297 ATGGTCAGGCACGATCTACGGATTTAACTTCATCGGGTTTTGTCTT-AAAGCCAAAGTTT 1355 Query 1151 CAAGAATCCATAAGAAGAGAAACTGCAATGTTTTAGTGTGGGAGT-CTGTGGGTTCGATG 1209 |||||||||| ||||||||||||| || | ||||||||||| | | |||| |||| | Sbjct 1356 CAAGAATCCACCAGAAGAGAAACTGTAACCTATTAGTGTGGGATTAC-GTGGTTTCGCTA 1414 Query 1210 TTCGAT-TGGATAATAAGAAGAATCCAAATGATGTTTGGATGGATCAAGAATGTTAATAG 1268 |||||| | | | ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1415 TTCGATCTAG-TGATAAGAAGAATCCAAATGATGATTGGATGGATCAAGAATGTTAATAG 1473 Query 1269 ATCACTCAGAAGCGTGATGAGGCAATGGTCTAAGAAGAATCCGATGTTTTGTTATACGGT 1328 |||| | ||||||||| | |||||||||||||||||||||||||| || ||| || || Sbjct 1474 ATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAGAATCCGATGATTCGTTGCACAGT 1533 Query 1329 TTACCCGTTATACCTCGTGTTCTTTGCAGGTATTCCTCAAGTTTTC-GCAGTCTTTTGGG 1387 |||||||||||| ||||||||||| || ||||||||| |||| ||| | |||| ||||| Sbjct 1534 TTACCCGTTATATCTCGTGTTCTTCGCCGGTATTCCTGAAGTATTCAG-AGTCCTTTGGA 1592 Query 1388 G-TCATATTGATCGAATCTTCAGTGTTAAATCTTATCTAGACGAGATTAGGTTCATATCG 1446 | | |||||||||||||| ||||||| |||||||||||||| |||||||||||| ||| Sbjct 1593 AAT-ACATTGATCGAATCTTTAGTGTTACATCTTATCTAGACGGGATTAGGTTCATTTCG 1651 Query 1447 A-ATGAGCCTTTGACGAAGAATCAATGGGAATTTATATTCAATGAGGTAAAGAATAAGTC 1505 | | |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 1652 AGA-GAGCCTTTGACGAAGAATCAATGGGAGTTTATATTCAATGAGGTCAAGGATAAGTC 1710 Query 1506 CTACTTTGCGGAAACACCCGACCTTACAAAGAAATTGTCTTCGGCGAGAGGAGAGTGGGT 1565 ||||||||||| || || || |||||||| |||||| |||||||||||| |||| Sbjct 1711 GGGGTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTCTTGGGCGAGAGGAGAATGGGC 1770 Query 1566 TTTACGAGATAT-GAT-TCTGGCAGAAAGT-GAGA-GATTGATGCGTTACGTAGAGAATG 1621 |||||||||| | || | || ||| || || | | |||||||||||| ||||||| | Sbjct 1771 TTTACGAGAT-TCGAAAT-TGATGGAA-GTTGATACG-TTGATGCGTTACATAGAGAAAG 1826 Query 1622 TTTCTTATGATCAAAGTCTTCTCCTTTGGCATATTGCTACTGAGCTCTGTTTTCAACAAG 1681 || ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1827 TTGATTATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGAGCTCTGTTTTCAAAAAG 1886 Query 1682 AAGAAAATGAGGA-GATGGAGAATCTAAGCCGAGATAA-TTACGATGACCGTGAATTTAG 1739 ||||| || ||| ||||||||| || ||| |||| | ||| |||||||| ||||| || Sbjct 1887 AAGAAGGTG-GGAAGATGGAGAAGCTGAGCAGAGA-AGGTTATGATGACCGAGAATTCAG 1944 Query 1740 CAAGATTACATCGGATTACATGATGTATTTGTTGATAATGCGACCAAAATTGATGTCGCA 1799 |||||||| |||||| ||||||||||||||||||||||||||||| || | |||||| | Sbjct 1945 CAAGATTATATCGGACTACATGATGTATTTGTTGATAATGCGACCGAAGCTAATGTCGGA 2004 Query 1800 AGTGGCAGGAATCGGAACTATAAGATTCAGAGACACTTTAGCTGAAGCTGAGAGGTTTTT 1859 |||||| |||||||| |||||| | || ||||| ||| ||||||||||||||||||||| Sbjct 2005 AGTGGCGGGAATCGGGACTATACGGTTTAGAGATACTAAAGCTGAAGCTGAGAGGTTTTT 2064 Query 1860 CAAAGGAAAGCATATCAAGAACCTGAGAGATATGAAACGAGCGAGTAAGATGATTTTATC 1919 |||||||| ||| |||||| || ||||||||||||||||||||||| ||| | || ||| Sbjct 2065 CAAAGGAAGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAGTGAGACGGTTCTATT 2124 Query 1920 GGTTAGTAACGATTAT-GAGCCAATG-TATGTGAAGGGAAATCGAAGCAAGTCGGTGCTT 1977 ||||||||||||| || ||||| || | |||||||||| |||||||||||||||| ||| Sbjct 2125 GGTTAGTAACGAT-ATTGAGCCGATACT-TGTGAAGGGAGATCGAAGCAAGTCGGTTCTT 2182 Query 1978 TTTGATGCGAGTATGTTGGCAAAAGAGCTTCAGAGA-TTGGAAGATAATAATAGTAGAAA 2036 || ||||||||||||||||| ||||||||||||| | ||| |||| | || || | ||| Sbjct 2183 TTCGATGCGAGTATGTTGGCGAAAGAGCTTCAGA-ACTTGAAAGAGAGTAGTAAT-GAA- 2239 Query 2037 CGGATATGGGAAATGGAGAGTGTTAAGTAAAGTGTGGGTTGAGTTGCTATGTTACGCAGC 2096 | || ||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 2240 -G-AT--GGGAAATGGAGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCAGC 2295 Query 2097 AAGTCAGTGTAAAGCTATGGAGCATGTGGCGCAACTTAGCAGAGGTGGGGAGCTTCTTAG 2156 |||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||| Sbjct 2296 AAGTCATTGTAAAGCGACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCTTCTTAA 2355 Query 2157 CTTTGTTTGGTTGTTGATGGCTCACTTTGGTTTATCAGATCAGTTTGAGATCGATAAAGG 2216 ||||||||||||||||||||||||||| || ||| |||||||||| ||||| ||||||| Sbjct 2356 CTTTGTTTGGTTGTTGATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAATAAAGG 2415 Query 2217 AGAACCTCGAGCTATACTCGTTGCAGGAGAG 2247 || || |||||| |||||||| ||||||| Sbjct 2416 TGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2446 Score = 667 bits (361), Expect = 0.0 Identities = 444/485 (92%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 1 ATGCAAGTGATTCCACCaaaaataaaaaaGATCTTAGACATATGGAACATCAGAGGACTT 60 |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| Sbjct 56 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACAAATGGAACATCAGAGGACTT 115 Query 61 GTGATATTGTCTCTGTTGTTCCAAACGTCTCTTATCTTCCTTGCACCGCTGCGGAAACGT 120 |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 116 GTGATAATGTCTCTGTTGTTCCAAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGC 175 Query 121 ACATCAAAGAAGTGGCTCGCTGTGGTTCTTTGGACCGCATATCTTTTAGCGGATTGGACC 180 ||||||||||||| |||||| | |||||| ||||| |||||||||||||||||||||||| Sbjct 176 ACATCAAAGAAGTTGCTCGCCGCGGTTCTATGGACAGCATATCTTTTAGCGGATTGGACC 235 Query 181 GCTAATTATGCGGTGTCACAGATTACTAAGAATCAAGGGAAAGAGCCAGAACCTGGCGAG 240 ||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 236 GCTAATTATGCGGTGTCTCAGATCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGA- 294 Query 241 T-TTCCAAAAAACAAGAAGGTACTTGCTATGTGGGCACCGTTCTTGTTGCTGCATCTTGG 299 | |||||||||||||||| | |||||| | |||||||| ||||||||| |||||||||| Sbjct 295 TCCTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 354 Query 300 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCATTATGGAAACGTCATTT 359 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 355 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTT 414 Query 360 GTTTAGCCTCGTCTCTCAAGCGCTCGCATGTGTTTATGCGGTGGTGCAATCGATGGAAAA 419 |||| |||||||||||||||| || ||| ||||||||||||||||||||||| | ||||| Sbjct 415 GTTTGGCCTCGTCTCTCAAGCTCTTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAA 474 Query 420 CGTATTATGGCCACCAATCACACTGTTATTCATCACCGGAACGATTAAATACGTGGAGAG 479 |||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 475 CGTATTATGGCCACCAATTACACTTTTATTCATCACAGGAACGATTAAGTACGTGGAGAG 534 Query 480 GTCAC 484 | ||| Sbjct 535 GACAC 539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111646012080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5