BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915539
Length=2250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45530.1 | Symbols: | Protein of unknown function (DUF594) ... 1877 0.0
> AT5G45530.1 | Symbols: | Protein of unknown function (DUF594)
| chr5:18454316-18457277 REVERSE LENGTH=2452
Length=2452
Score = 1877 bits (1016), Expect = 0.0
Identities = 1527/1771 (86%), Gaps = 46/1771 (3%)
Strand=Plus/Plus
Query 497 GACCCCCGAAACTCGTTAGACCGGACCGAGATTTAACCGATCTCGAAATCGTTCAATACG 556
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GACCCCCTACACTCGTTAAACCGGACCGAGATTTAACCGATCTCGAAATCGTTCAATACG 761
Query 557 GCTACAAATTCTTCAACACTTTCAAAGGTCTTGTTGTTGATCTTGTTTTCAGTT-CTAGT 615
| | ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 762 GTTTCAAATTCTTCAACACTTTCAAAGGTCTTGTTGTTGATCTCATTTTCAGTTTCC-GT 820
Query 616 GAGCGAGACGAAAGCAGAGATTTCTTCAATGAGTTGAAACCGGGAGAAGCACTAAGGATT 675
|||||||||||||| |||||||||||||| ||||||||||| |||||||| || | |||
Sbjct 821 GAGCGAGACGAAAGTAGAGATTTCTTCAAAGAGTTGAAACCTGGAGAAGCTCTTCGAATT 880
Query 676 ATTGAATCCGAGCTTGATTTTCTATACGAATTGATGTTTACTAAAACTGCGATTCTTCAC 735
|| ||| ||||||| | |||||| ||||||| ||||| ||| ||||| || ||||||||
Sbjct 881 ATCGAAACCGAGCTCGGTTTTCTTTACGAATCGATGTATACCAAAACCGCAATTCTTCAT 940
Query 736 AC-GATAACCGGTACTCTGTTTCGGTTAATTGCGTTTGGATCACTTATTTCTTCCTTCTT 794
|| | || |||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 941 ACCGG-AATCGGTACTCTGTTTCGGTTAATTTCCTTTGGATCACTTCTTTCTTCCTTCTT 999
Query 795 TGTCTTCCATCGTAGGCCGCTTAAGTCTGAGGAATTTCATGGAGCAGACATTGTGATTAC 854
||||||||||||||| ||||| ||||| || || |||||||||||||| | ||||||||
Sbjct 1000 TGTCTTCCATCGTAGACCGCTAAAGTCCGAAGATTTTCATGGAGCAGATGTGGTGATTAC 1059
Query 855 TTACACATTGTTCATCGTTGGTATCGCGCTTGATCTC-CTGTCAATAGTCATGTTCTTGT 913
|||| ||||| || |||||||||||||||||||| | |||||| ||||| ||||||
Sbjct 1060 TTACGTTTTGTTTATAGTTGGTATCGCGCTTGATCTTGC-GTCAATGGTCATTTTCTTGC 1118
Query 914 TCTCGGATTGGACATAT-GCGGTATTGAGTAAGCTTAAGGATGATCCAGAGGAATATAAT 972
||||||||||||||| | || ||| | || || ||||||||||||||||||||| | | |
Sbjct 1119 TCTCGGATTGGACAT-TCGCAGTACTAAGAAACCTTAAGGATGATCCAGAGGAAAAGAGT 1177
Query 973 AGTTTTATCGACTCTTTACTCAATTGGTTTCTCGCGTTTAGGAAACTGCGTTGTAAGAAG 1032
| || ||||||||||||| |||| |||||||||| ||||||||||| ||||| ||||||
Sbjct 1178 ACTTCTATCGACTCTTTATTCAACTGGTTTCTCGAGTTTAGGAAACCCCGTTGGAAGAAG 1237
Query 1033 CATACATGCAATGGAAACCATACCCACGAGGTGCTCTCGACGGGGTTTTGGT-CACGGAG 1091
||||||||||| |||||||| ||||||||||| |||||||||||||||| | |||| ||
Sbjct 1238 CATACATGCAACGGAAACCAAACCCACGAGGTACTCTCGACGGGGTTTTT-TACACGTAG 1296
Query 1092 ATGGTCAGGCATGATCTACGGATTCAATTTCATCGGGTTTTGT-TTGAAAGCCAAAGTTT 1150
||||||||||| |||||||||||| || ||||||||||||||| || |||||||||||||
Sbjct 1297 ATGGTCAGGCACGATCTACGGATTTAACTTCATCGGGTTTTGTCTT-AAAGCCAAAGTTT 1355
Query 1151 CAAGAATCCATAAGAAGAGAAACTGCAATGTTTTAGTGTGGGAGT-CTGTGGGTTCGATG 1209
|||||||||| ||||||||||||| || | ||||||||||| | | |||| |||| |
Sbjct 1356 CAAGAATCCACCAGAAGAGAAACTGTAACCTATTAGTGTGGGATTAC-GTGGTTTCGCTA 1414
Query 1210 TTCGAT-TGGATAATAAGAAGAATCCAAATGATGTTTGGATGGATCAAGAATGTTAATAG 1268
|||||| | | | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1415 TTCGATCTAG-TGATAAGAAGAATCCAAATGATGATTGGATGGATCAAGAATGTTAATAG 1473
Query 1269 ATCACTCAGAAGCGTGATGAGGCAATGGTCTAAGAAGAATCCGATGTTTTGTTATACGGT 1328
|||| | ||||||||| | |||||||||||||||||||||||||| || ||| || ||
Sbjct 1474 ATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAGAATCCGATGATTCGTTGCACAGT 1533
Query 1329 TTACCCGTTATACCTCGTGTTCTTTGCAGGTATTCCTCAAGTTTTC-GCAGTCTTTTGGG 1387
|||||||||||| ||||||||||| || ||||||||| |||| ||| | |||| |||||
Sbjct 1534 TTACCCGTTATATCTCGTGTTCTTCGCCGGTATTCCTGAAGTATTCAG-AGTCCTTTGGA 1592
Query 1388 G-TCATATTGATCGAATCTTCAGTGTTAAATCTTATCTAGACGAGATTAGGTTCATATCG 1446
| | |||||||||||||| ||||||| |||||||||||||| |||||||||||| |||
Sbjct 1593 AAT-ACATTGATCGAATCTTTAGTGTTACATCTTATCTAGACGGGATTAGGTTCATTTCG 1651
Query 1447 A-ATGAGCCTTTGACGAAGAATCAATGGGAATTTATATTCAATGAGGTAAAGAATAAGTC 1505
| | |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 1652 AGA-GAGCCTTTGACGAAGAATCAATGGGAGTTTATATTCAATGAGGTCAAGGATAAGTC 1710
Query 1506 CTACTTTGCGGAAACACCCGACCTTACAAAGAAATTGTCTTCGGCGAGAGGAGAGTGGGT 1565
||||||||||| || || || |||||||| |||||| |||||||||||| ||||
Sbjct 1711 GGGGTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTCTTGGGCGAGAGGAGAATGGGC 1770
Query 1566 TTTACGAGATAT-GAT-TCTGGCAGAAAGT-GAGA-GATTGATGCGTTACGTAGAGAATG 1621
|||||||||| | || | || ||| || || | | |||||||||||| ||||||| |
Sbjct 1771 TTTACGAGAT-TCGAAAT-TGATGGAA-GTTGATACG-TTGATGCGTTACATAGAGAAAG 1826
Query 1622 TTTCTTATGATCAAAGTCTTCTCCTTTGGCATATTGCTACTGAGCTCTGTTTTCAACAAG 1681
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1827 TTGATTATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGAGCTCTGTTTTCAAAAAG 1886
Query 1682 AAGAAAATGAGGA-GATGGAGAATCTAAGCCGAGATAA-TTACGATGACCGTGAATTTAG 1739
||||| || ||| ||||||||| || ||| |||| | ||| |||||||| ||||| ||
Sbjct 1887 AAGAAGGTG-GGAAGATGGAGAAGCTGAGCAGAGA-AGGTTATGATGACCGAGAATTCAG 1944
Query 1740 CAAGATTACATCGGATTACATGATGTATTTGTTGATAATGCGACCAAAATTGATGTCGCA 1799
|||||||| |||||| ||||||||||||||||||||||||||||| || | |||||| |
Sbjct 1945 CAAGATTATATCGGACTACATGATGTATTTGTTGATAATGCGACCGAAGCTAATGTCGGA 2004
Query 1800 AGTGGCAGGAATCGGAACTATAAGATTCAGAGACACTTTAGCTGAAGCTGAGAGGTTTTT 1859
|||||| |||||||| |||||| | || ||||| ||| |||||||||||||||||||||
Sbjct 2005 AGTGGCGGGAATCGGGACTATACGGTTTAGAGATACTAAAGCTGAAGCTGAGAGGTTTTT 2064
Query 1860 CAAAGGAAAGCATATCAAGAACCTGAGAGATATGAAACGAGCGAGTAAGATGATTTTATC 1919
|||||||| ||| |||||| || ||||||||||||||||||||||| ||| | || |||
Sbjct 2065 CAAAGGAAGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAGTGAGACGGTTCTATT 2124
Query 1920 GGTTAGTAACGATTAT-GAGCCAATG-TATGTGAAGGGAAATCGAAGCAAGTCGGTGCTT 1977
||||||||||||| || ||||| || | |||||||||| |||||||||||||||| |||
Sbjct 2125 GGTTAGTAACGAT-ATTGAGCCGATACT-TGTGAAGGGAGATCGAAGCAAGTCGGTTCTT 2182
Query 1978 TTTGATGCGAGTATGTTGGCAAAAGAGCTTCAGAGA-TTGGAAGATAATAATAGTAGAAA 2036
|| ||||||||||||||||| ||||||||||||| | ||| |||| | || || | |||
Sbjct 2183 TTCGATGCGAGTATGTTGGCGAAAGAGCTTCAGA-ACTTGAAAGAGAGTAGTAAT-GAA- 2239
Query 2037 CGGATATGGGAAATGGAGAGTGTTAAGTAAAGTGTGGGTTGAGTTGCTATGTTACGCAGC 2096
| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2240 -G-AT--GGGAAATGGAGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCAGC 2295
Query 2097 AAGTCAGTGTAAAGCTATGGAGCATGTGGCGCAACTTAGCAGAGGTGGGGAGCTTCTTAG 2156
|||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2296 AAGTCATTGTAAAGCGACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCTTCTTAA 2355
Query 2157 CTTTGTTTGGTTGTTGATGGCTCACTTTGGTTTATCAGATCAGTTTGAGATCGATAAAGG 2216
||||||||||||||||||||||||||| || ||| |||||||||| ||||| |||||||
Sbjct 2356 CTTTGTTTGGTTGTTGATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAATAAAGG 2415
Query 2217 AGAACCTCGAGCTATACTCGTTGCAGGAGAG 2247
|| || |||||| |||||||| |||||||
Sbjct 2416 TGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2446
Score = 667 bits (361), Expect = 0.0
Identities = 444/485 (92%), Gaps = 2/485 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGTGATTCCACCaaaaataaaaaaGATCTTAGACATATGGAACATCAGAGGACTT 60
|||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 56 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACAAATGGAACATCAGAGGACTT 115
Query 61 GTGATATTGTCTCTGTTGTTCCAAACGTCTCTTATCTTCCTTGCACCGCTGCGGAAACGT 120
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 116 GTGATAATGTCTCTGTTGTTCCAAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGC 175
Query 121 ACATCAAAGAAGTGGCTCGCTGTGGTTCTTTGGACCGCATATCTTTTAGCGGATTGGACC 180
||||||||||||| |||||| | |||||| ||||| ||||||||||||||||||||||||
Sbjct 176 ACATCAAAGAAGTTGCTCGCCGCGGTTCTATGGACAGCATATCTTTTAGCGGATTGGACC 235
Query 181 GCTAATTATGCGGTGTCACAGATTACTAAGAATCAAGGGAAAGAGCCAGAACCTGGCGAG 240
||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct 236 GCTAATTATGCGGTGTCTCAGATCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGA- 294
Query 241 T-TTCCAAAAAACAAGAAGGTACTTGCTATGTGGGCACCGTTCTTGTTGCTGCATCTTGG 299
| |||||||||||||||| | |||||| | |||||||| ||||||||| ||||||||||
Sbjct 295 TCCTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 354
Query 300 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCATTATGGAAACGTCATTT 359
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 355 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTT 414
Query 360 GTTTAGCCTCGTCTCTCAAGCGCTCGCATGTGTTTATGCGGTGGTGCAATCGATGGAAAA 419
|||| |||||||||||||||| || ||| ||||||||||||||||||||||| | |||||
Sbjct 415 GTTTGGCCTCGTCTCTCAAGCTCTTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAA 474
Query 420 CGTATTATGGCCACCAATCACACTGTTATTCATCACCGGAACGATTAAATACGTGGAGAG 479
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 475 CGTATTATGGCCACCAATTACACTTTTATTCATCACAGGAACGATTAAGTACGTGGAGAG 534
Query 480 GTCAC 484
| |||
Sbjct 535 GACAC 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111646012080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5