BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915560
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45440.1 | Symbols: | P-loop containing nucleoside triphosp... 529 2e-149
AT5G45490.1 | Symbols: | P-loop containing nucleoside triphosp... 418 4e-116
> AT5G45440.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:18412308-18413555
REVERSE LENGTH=1248
Length=1248
Score = 529 bits (286), Expect = 2e-149
Identities = 510/615 (83%), Gaps = 28/615 (5%)
Strand=Plus/Plus
Query 249 TCTCGGAGTTGAAGATTCGATGTTCGAATTCATCCGTAGCGAAGTAGTAGAAGAAGCTTC 308
||| ||||||||||| || |||||||||| ||||| ||| |||||||||||||||| |||
Sbjct 503 TCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCATAGAGAAGTAGTAGAAGAAGTTTC 562
Query 309 AAAGAGGCGGGAAGCTGGAGAAATTGATGGAGAGACAGCGAAAGAGAAGGAGTTTTCTGT 368
||| |||| ||||||||||||||||||||||||||| || |||||||||||| | ||||
Sbjct 563 AAACAGGCAGGAAGCTGGAGAAATTGATGGAGAGACGGCTAAAGAGAAGGAGATCTCTGC 622
Query 369 TTTGCTCTATGCACTGCATTTGAATCTGAGGTGGAAGAAGTATCTGATTGTATTTGATGA 428
| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 623 TCTGCTCTATGCACTTCACTTGAATCTGAGGTGGAAGAAGTATCTGATTGTGTTTGATGA 682
Query 429 TGTGCGAG-ACGAG-GACAATTGGGATGAGAAGCTCGATGTGAAATTCAAGGAGGGTGAG 486
||| | || | || || || ||||| ||||| ||||||| |||| |||| ||||||||
Sbjct 683 TGTCC-AGGA-GATCGATAACTGGGACGAGAAACTCGATGCGAAACTCAACGAGGGTGAA 740
Query 487 AAATGGGGGAAGCATCTTTCAGATGGATTCCCTAAAGAGTCTGGTGGGAGAGTCATATAC 546
|||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 741 AAATGGGGAAAGTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGGGTCATATAC 800
Query 547 ACGACCAGGGAAAAGAAACTGGC-ACAGAAGCTAGTTG--CAGAAGAACATGAGATACAT 603
|||||||| || |||| ||||| | |||| || |||| ||||| | |||||||| |||
Sbjct 801 ACGACCAGAGATGAGAATCTGGCGA-AGAACCTTGTTGTTCAGAA-A-CATGAGATCCAT 857
Query 604 CGTCTTTGGCCTTTGA-CTGATACTGAGAGTGTCTGGAACATATATAAAG-AA-GCGCTG 660
||||||||||| | | ||||| || | ||||| ||||| |||||| ||| || | |
Sbjct 858 CGTCTTTGGCCGCT-ATCTGATTCTAACAGTGTTTGGAAGATATATGAAGCAATGATCCA 916
Query 661 GAAGAGA-ATGAAGAAGAGCCTCCAAGGAACGACAAGAAATGC-TCAGTTGAGCTGATGA 718
||||||| | ||| | ||| |||||||||||||||||||||| | || |||||||||||
Sbjct 917 GAAGAGAGA-GAA-A-GAGTCTCCAAGGAACGACAAGAAATGTAT-AGATGAGCTGATGA 972
Query 719 ACAAGTCTCGTGGTCTTCC-CTTAGCCGCTAGACAGTTGGCC-ACGCTTCTTCCCGTGTT 776
||||||||||||||||||| || || ||||||| |||||| | |||| |||| ||||
Sbjct 973 ACAAGTCTCGTGGTCTTCCTCTG-GCTGCTAGACTGTTGGCTGA-GCTTGATCCCATGTT 1030
Query 777 TCTTT-ACGTTGAAAAAGCTGACCAGAAAGGTTATACCCATG-AACCAGCCAACTCAGCC 834
||| ||| || ||| ||| ||||||| |||| || ||| || | || |||||| |
Sbjct 1031 G-TTTGACGATGGAAAGGCTAACCAGAACGGTTCTAAAGATGGAAAAA-CCGACTCAGTC 1088
Query 835 AACAACCCCACTTCA 849
||||||||| ||||
Sbjct 1089 GACAACCCCAATTCA 1103
> AT5G45490.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:18431003-18432397
FORWARD LENGTH=1395
Length=1395
Score = 418 bits (226), Expect = 4e-116
Identities = 398/480 (83%), Gaps = 16/480 (3%)
Strand=Plus/Plus
Query 318 GGAAGCTGGAGAAATTGATGGAGAGACAGCGAAAGAGAAGGAGTTTTCTGTTTTGCTCTA 377
||||||||||||||||||| ||||||| | ||||||||||||| | |||| | |||||||
Sbjct 580 GGAAGCTGGAGAAATTGATAGAGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTCTA 639
Query 378 TGCACTGCATTTGAATCTGAGGTGGAAGAAGTATCTGATTGTATTTGATGATGTGCGAGA 437
|||||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 640 TGCACTTCACTTGAATCTGAGGTGGAAGAAATATCTGATTGTGTTTGATGATGTTCGGGA 699
Query 438 CGAGGACAATTGGGATGAGAAGCTCGATGTGAAATTCAAGGAGGGTGAGAAATGGGGGAA 497
| || || ||||| || ||||| |||| |||| ||||||||| |||||||||||| ||
Sbjct 700 AAACGATAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGAAA 759
Query 498 GCATCTTTCAGATGGATTCCCTAAAGAGTCTGGTGGGAGAGTCATATACACGACCAGGGA 557
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 760 GTATCTTTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGAGA 819
Query 558 AAAGAAACTGGC-ACAGAAGCTAGTTGC--AGAAGAACATGAGATACATCGTCTTTGGCC 614
|||| ||||| | |||| || ||||| |||| | |||||||| ||||||||||||||
Sbjct 820 TGAGAATCTGGCGA-AGAACCTTGTTGCTCAGAA-A-CATGAGATCCATCGTCTTTGGCC 876
Query 615 TTTGACTGAT-ACTGAGAGTGTCTGGAACATATATAAAGAAGCGCTGGAAGAGAATGAAG 673
|| ||||| | | ||||||||||||| |||||| | | || | | |||| || | |
Sbjct 877 GCTGTCTGATCA-TCAGAGTGTCTGGAAGATATATGATGCAGTGGTTAAAGATAAACA-G 934
Query 674 AA-GAGCCTCCAAGGAACGACAAGAAATGC-TCAGTTGAGCTGATGAACAAGTCTCGTGG 731
|| ||| | |||||||||||||||||||| | || |||||||||||| |||||||||||
Sbjct 935 AAAGAGTCACCAAGGAACGACAAGAAATGTAT-AGATGAGCTGATGAATAAGTCTCGTGG 993
Query 732 TCTTCC-CTTAGCCGCTAGACAGTTGGCC-ACGCTTCTTCCCGTGTTTCTTTACGTTGAA 789
|||||| || || || |||| |||||| | || | |||||| ||| || ||| ||||
Sbjct 994 TCTTCCTCTG-GCTGCCAGACTGTTGGCTGA-GCGTGATCCCGTCTTTGTTGACGATGAA 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5