BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915561
Length=3249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45510.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 545 8e-154
> AT5G45510.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:18444657-18449446 FORWARD LENGTH=4185
Length=4185
Score = 545 bits (295), Expect = 8e-154
Identities = 992/1311 (76%), Gaps = 117/1311 (9%)
Strand=Plus/Plus
Query 1840 AACAGAAACTTTTATCATCTTACACAACTTCAGC-TCCTTGACTTCTCAGAGAGCCAAAT 1898
|||| ||||||||||| ||||||| ||||||||| | ||||||||||| | |||||||||
Sbjct 2470 AACAAAAACTTTTATCTTCTTACAAAACTTCAGCAT-CTTGACTTCTCGGGGAGCCAAAT 2528
Query 1899 AGAGCGACTACCAATGTTCCAGGACTTTCT--GGTGCCCGCCAGGCTTCACTCCTTGGCT 1956
||||||||| ||||| |||||||| |||| |||| |||||| ||||||||||||| ||
Sbjct 2529 AGAGCGACTGCCAATATTCCAGGA--TTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACT 2586
Query 1957 CGGCTCTTGTTGCATAACTGTAAAAAATTGAGAAAATTACCGAATCTGAAGCCTTTGTCA 2016
||||||||||||| ||||||| |||||||||| || || | | ||||||| ||||||
Sbjct 2587 CGGCTCTTGTTGCGCAACTGTAGCAAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCA 2646
Query 2017 GGTCTCCAAATTCTTGATCTTTCTGGCAGTTCTAGCTTAGTGAAAATACTGGAAGTATGC 2076
|| || |||||||||||||||||||||| | | ||||||||| |||| || ||||| |||
Sbjct 2647 GGACTTCAAATTCTTGATCTTTCTGGCACTACGAGCTTAGTGGAAATGCTTGAAGTGTGC 2706
Query 2077 TTCGAGGATAAGAAGGAACTCAAAATTCTTAATCTGTCAGGCACTAATCTTTGCCAGTTG 2136
|||||||||||| |||||||||| ||||||||| || || ||||||||| || |||||
Sbjct 2707 TTCGAGGATAAGCTTGAACTCAAAACTCTTAATCTCTCGGGAACTAATCTTAGCGAGTTG 2766
Query 2137 CCTTCCACCATTGAGGAGCTACCCAATCTCAGCGAACTCCTCTTAAGGGATTGCACCAAC 2196
|| ||||||| ||||| || ||| ||||| |||||||||| || | ||||||| ||||
Sbjct 2767 GCTACCACCATCGAGGACCTGTCCAGTCTCAACGAACTCCTCCTACGTGATTGCATCAAC 2826
Query 2197 CTAGAAGCTC-TCCCAAACATTGCA-AAGCTCAG-AAATCTCG-AGATCTTTGAAG-TTC 2251
||||| || | |||||||||| | | || || || |||||||| || || |||| | |||
Sbjct 2827 CTAGATGC-CATCCCAAACATCG-AGAAACT-AGAAAATCTCGAAG-TCATTGATGTTTC 2882
Query 2252 ATGGTTGTACTAAG-TTGCATAAGATTGATGGATCATTTGAGGACATGTCTTACCTGCGT 2310
|| || | ||| | ||| |||||||| |||||||||||| | |||| |||||| |||
Sbjct 2883 -CGGCAGTGCCAAGCTGGCA-AAGATTGAGGGATCATTTGAGAAAATGTTTTACCTACGT 2940
Query 2311 GAAATAGATCTCTCTGGCACCAAAGTGATGAAACCACCGGAGTTGCCAAAGGAAAGCAAA 2370
| | | ||||| ||||| ||| ||||| || | |||| ||||||||| ||| | ||||
Sbjct 2941 GTAGTGGATCTGTCTGGAACCCAAGTG--GAGA-CACCAGAGTTGCCAGCGGATACCAAA 2997
Query 2371 CTCTATTGTAC-AAAGCGTATTACGCTAAAAGAT--AAAAGGCCTTTTAAAGGT-A-AGG 2425
|| ||||| | |||||| |||| | |||| |||| | |||| || || | |
Sbjct 2998 ATCCATTGT-CTGAAGCGTTTTACTCGGGCAGATGGAAAATG--TTTTGAACGTGACA-C 3053
Query 2426 ATTGGAGTCAAGTAGTGAAAAACA-TGCAAAGTGGGATA--TCAGAGAATTCTAGCTCCT 2482
| ||||| || || | || ||| || || || |||| || |||||| | |||||||
Sbjct 3054 A-TGGAGAGAAATAAAGGAAGACATTG-AACGT--GATAGGTCTGAGAATGCCAGCTCCT 3109
Query 2483 CCGATGCAGTTGTTGA-ATCCCAAGAAATCTCAGAAAAGGAGTCTG--G-----AGA-A- 2532
| |||||||||||| | ||| ||||||||| |||||||| || ||| | ||| |
Sbjct 3110 CTGATGCAGTTGTT-ATATCTCAAGAAATCACAGAAAAGAAGCCTGTAGAAATAAGAGAG 3168
Query 2533 ATTCAGTCGCATGAACCTGGTTCCAGTGATT-TTCC---------G--GTCAGCATGGAA 2580
|| | ||| ||| |||| | ||||||||| | || | |||| || ||||
Sbjct 3169 GTTGAATCGAATGCACCTCGCGCCAGTGATTGTACCGAGAAAGTAGATGTCAACAAGGAA 3228
Query 2581 -GAT-TT-TGGCCAGTTTCCTATATACAGGGCTGTTTATCAGAAGTCAAT-AC--C-CTT 2633
| | || | || | || ||| | |||||| | ||||||||| || | || | | |
Sbjct 3229 CG-TCTTCT-TAAAG-TCCCCATAGATAGGGCTCTATATCAGAAGGCACTAACATCAC-T 3284
Query 2634 TGTTGATTCTGAAAGT-CATC--CAATAA-TCTTGGAGATCCATGGGTCTAAT-AGCCAT 2688
||||||||| ||| | || | || || ||||||||||| ||| ||||| ||| |
Sbjct 3285 TGTTGATTCCAAAATTCCA-CAAGAAGAAGTCTTGGAGATCAATGAAACTAATAAGCTA- 3342
Query 2689 GATCTGGAGAAGGAAACCCTAGCTAAG-GCTGAGTTTGTGTCTTTTGTGGACTGTAGCTC 2747
|| | | ||||| | |||||| || |||||||||||||||||||||||||||| |||
Sbjct 3343 GA--T---G-AGGAAGCACTAGCT-AGTGCTGAGTTTGTGTCTTTTGTGGACTGTA-CTC 3394
Query 2748 --GACACGGCTTACATCTGTCTTTAACGAGATG--AAATCGGTGAAGGGTTGTTGGCTAA 2803
|| | || | | |||| ||||| | || | | |||| |||||||||||| |||||||
Sbjct 3395 CTGAAAGGG-TCAAATCTATCTTTGA-GA-AGGCCAAATTGGTGAAGGGTTGCTGGCTAA 3451
Query 2804 GGATGTGCAAGGACATTGAATACATTTTCGCTGGTGTGGAAGAGGA-A-CGTGTGGGATC 2861
|||||||| ||||| || || ||||| ||||||||| ||||| | | | || |||
Sbjct 3452 GGATGTGCTTTGACATAAAAGACCCTTTCGATGGTGTGGATGAGGAGAAC-T-TGAAATC 3509
Query 2862 CCTGGAGGTTTTGTCGATTACAAACCTTAGATTATTAAAAAGTTTAT-CAATTGGTGGTA 2920
|||||| ||| ||||||||||||||| | ||| | | | || | || || ||
Sbjct 3510 ACTGGAGACTTTATCGATTACAAACCTTCTCTCATTGGAGACTATAAGCT-TTATTGCTA 3568
Query 2921 -GCTTCA-AGAATCTGAAGAGGCTAAGCATAGATTGCTGCCCGAATATCAAAACGCTTTT 2978
| || | |||||||||||| |||||| |||||||||||||||| ||||||||| ||||
Sbjct 3569 AG-TT-AGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATTTT 3626
Query 2979 CGTGGAAGCATCGCAGCTCCCTAGCAACCTAGAAGTCTTGCATATAAAGT-TCTGTGAGA 3037
| ||| | || || || || ||| | || |||| || || ||||| | |||||||
Sbjct 3627 CCCGGA-G-AT-GC--CTGCC-AGC--C-TACCAGTCCTGAATTTAAAGCAT-TGTGAGA 3676
Query 3038 ACCTGGAGAAAGT-GTCCATAGAAGGAGAAGTGTCAACTCTCACTACTCTG 3087
||||||||||||| || ||| || ||||||||||||| ||||| ||||
Sbjct 3677 ACCTGGAGAAAGTTGTTG-TAGGAGTTGAAGTGTCAACTCACACTAATCTG 3726
Score = 516 bits (279), Expect = 6e-145
Identities = 683/872 (78%), Gaps = 52/872 (6%)
Strand=Plus/Plus
Query 997 TGTTTCTGGCATAGCTTGAACTTCTTCGAGCACTGTGGGAGTGTTTATTACTGGGAGTTG 1056
||||| |||||||||||| ||||||| ||||| ||||| ||||||| ||| | || ||
Sbjct 1594 TGTTTTTGGCATAGCTTGGACTTCTTTGAGCATTGTGGCTGTGTTTACTACCGTGACCTG 1653
Query 1057 ATCGCACATTGGATACTTGAAGGCTACTTCGATCCTGTTAGATCAGTTACG--AAGGCCT 1114
||| |||| |||||||||||||||||||| ||||||||||| || | | || ||||| |
Sbjct 1654 ATCACACAATGGATACTTGAAGGCTACTTTGATCCTGTTAGGTCTG-T-CGAAAAGGCGT 1711
Query 1115 A-TATGGATGCCCATGCTATCTTAATGGAGCTTATAAACCGTGGTATTCTGAAGATACAA 1173
| | ||||| ||| ||||||| |||||||||||| |||| || || ||||||||||||
Sbjct 1712 ACCA-GGATGGTCATTCTATCTTCATGGAGCTTATAGACCGCGGAATGCTGAAGATACAA 1770
Query 1174 GAGGACAATGTGGTTA-TGCCAGAGATGGCAATGAAG-AATTTAATAGATCTTCG-CTGT 1230
|| ||||||||| || | ||||||||||| ||| || ||| |||| |||| ||| | ||
Sbjct 1771 GAAAACAATGTGG-TAGTACCAGAGATGGCGATG-AGAAATGTAATTGATCCTCGAC-GT 1827
Query 1231 CGT-GGAATACTAGCCAGATCTAGGATTTCACTTGCTAAAGTTTGTGGTAGTGACATGAA 1289
|| || || ||| | |||| || || | || ||| ||| | |||| || ||| ||
Sbjct 1828 GGTGGGCAT-TTAGGGAAATCTCGGCTTGGATTTTCTAGAGTCTATGGTGGTAACAAGAG 1886
Query 1290 AAAAGGTCTAGGGAAAATTAACCAAGGGGATGACATCA-TAGAAGCAGTGCGACCGACTA 1348
|||||| |||||||||| | |||| ||||| || | || || |||||| | | | |
Sbjct 1887 AAAAGGAATAGGGAAAATCACCCAACTTGATGATATGATTA-AAACAGTGC-A-AG-CAA 1942
Query 1349 GGAAAGGCA-A-AATAATTACAACAG-TTCTGGTTAGTGGAAACCGTTTGCGTCGTGAAA 1405
|||||| | | || ||||| || | |||||||||||||| | ||| ||||||| | ||
Sbjct 1943 AGAAAGG-AGACAA-GATTACCAC-GATTCTGGTTAGTGGAGATCGTCTGCGTCGCGTAA 1999
Query 1406 CTCC-AGAGATTTTCTT-TGGAACGCTGAAGGATCTTG-AGATACTTGGCCTTTTTAAAC 1462
|||| | | | ||||| ||| ||||| || |||| || |||||||||||||| | |
Sbjct 2000 CTCCTA-AAAAGTTCTTCAAGAA-TCTGAAAGAGCTTGAAG-TACTTGGCCTTTTTGAGC 2056
Query 1463 CCACA-TTGGATCATTTTGTCCCATCTTTATTAACACT-AG-TGAAACT--T-CGAGTTC 1516
||||| | | || |||||||| ||||| || | | | || | ||||| | || ||||
Sbjct 2057 CCACAGTAAAACCA-TTTGTCCCGTCTTT-TTCAGA-TCAGCTCAAACTCCTCCGGGTTC 2113
Query 1517 TCGTGATCAGGGACTGTGACCGACTG-AAAGATATAGAGGATCTTAAGTCTC-T-CGAAG 1573
| | |||||||||||||| | ||| |||| || || || |||||| ||| | | ||
Sbjct 2114 TTATAATCAGGGACTGTGATCTCCTGAAAAG-CATTGAAGAGCTTAAGGCTCTTAC-AA- 2170
Query 1574 GGCTACGTGTTCTTGAAGTTTCTGGTGCTAGCTCCCTGAAG-AAAATCTCTGACGAATTC 1632
|||| | ||||||||||||||||||||||||||||| | ||||| ||||| |||||
Sbjct 2171 AGCTAAATACTCTTGAAGTTTCTGGTGCTAGCTCCCTGA-GCAAAATATCTGAAAAATTC 2229
Query 1633 TTTAAGGCATTGTC-TAAACTTCAAAGTCTTCATCTCTCTGAGCTTCAGATC-ACATCTT 1690
||| || |||| || | |||| | ||||||||| ||||||| |||| ||||| | ||||
Sbjct 2230 TTTGAGTCATT-TCCTGAACTCCGAAGTCTTCACCTCTCTGGGCTTAAGATCGAG-TCTT 2287
Query 1691 CCCCTTCCAGCATTTCTGAACTGACGGAACTTCATTGTCTCATCATCAAGGACTGTCCTT 1750
||||| |||| ||||||| |||| ||||||||| |||||||||||||| ||||| ||||
Sbjct 2288 CCCCTCCCAGTATTTCTGGCCTGAAGGAACTTCACTGTCTCATCATCAAAGACTGCCCTT 2347
Query 1751 TATTGGAAGATTTGCCAGACATACAAGAACTAGTGAAGCTTGAGGTTGTTGATATTTCTG 1810
||||| ||||| ||||| |||||||||||||||| || ||||||||||||||| ||||||
Sbjct 2348 TATTGCAAGATCTGCCAAACATACAAGAACTAGTAAATCTTGAGGTTGTTGATGTTTCTG 2407
Query 1811 GTGCTCGTGGACTTCAAACTTGCTTCGACAAC 1842
||||| |||| |||| |||||| |||||||||
Sbjct 2408 GTGCTAGTGGGCTTCGAACTTGTTTCGACAAC 2439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161637890346
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5