BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915566
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37790.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 734 0.0
> AT2G37790.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:15838764-15840932 FORWARD LENGTH=1199
Length=1199
Score = 734 bits (397), Expect = 0.0
Identities = 678/805 (84%), Gaps = 53/805 (7%)
Strand=Plus/Plus
Query 172 GCAGACGAAATCAGATTC-TTCAAGCTCAACACTGGAGCGAAGATACCATCCGTTGGTCT 230
||||| ||||| |||||| || || |||||||| |||||||||||||||||||| |||||
Sbjct 78 GCAGAGGAAATTAGATTCTTTGAA-CTCAACACCGGAGCGAAGATACCATCCGTCGGTCT 136
Query 231 CGGAACGTGGCAGGCCGATCCTGGTCTCGTAGGAAACGCTGTCGAAGCCGCTGTTAAGAT 290
||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||
Sbjct 137 AGGAACGTGGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGAT 196
Query 291 TGGTTATAGGCACATTGATTGTGCTCAAATCTATGGCAACGAAAAGGAGATTGGGTTAGT 350
||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 197 TGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAGATTGGGTTAGT 256
Query 351 CCTGAAGAAACTGTTTGATGATGGAGTTGTTAAGCGTGAGGAAATCTTCATCACATCCAA 410
|||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 257 CCTGAAGAAATTGTTTGATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAA 316
Query 411 ACTCTGCTGTACTTCTCATAATCCTCAAGATGTGCCAGATGCTCTGAACAGAACTCTACA 470
||| || ||||||| |||| |||||||||| ||||| || || || || |||||||||||
Sbjct 317 ACTATGGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCTACA 376
Query 471 GGATCTACAGCTTGACTATGTCGATTTGTATCTCATTGACTGGCCTGTTAGCCTCAAGGA 530
|||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||| |
Sbjct 377 GGATCTGCAGCTTGACTACGTCGATCTGTATCTCATTCACTGGCCTGTTAGCCTCAAGAA 436
Query 531 AGGTTCAACTGGTTTTAAGCCAGAGAACAATTTGCCAACTGATACTCCTAGCACATGGAA 590
||| || ||||| ||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 437 AGGATCTACTGGCTTTAAACCAGAGAACATTTTGCCAACTGATATTCCTAGCACATGGAA 496
Query 591 AGAAATGGAAGCACTCGTTGATGTGC-GA-AAGGCCCGAGCTATTGGTGTCAGCAATTTC 648
|| ||||||| ||||| ||||| | | | |||||||| ||||||||||| || ||||||
Sbjct 497 AGCAATGGAATCACTCTTTGAT-T-CAGGCAAGGCCCGTGCTATTGGTGTAAGTAATTTC 554
Query 649 TCAACAAAGAGACTCGCAAAGCTCTTGGAGGTGGCTCGCGTCCCTCCTGCTGTTAACCAG 708
|| |||||| ||||||| | ||||||| ||||||||| || ||||| ||||||||||||
Sbjct 555 TCCTCAAAGAAACTCGCAGATCTCTTGGTGGTGGCTCGTGTTCCTCCCGCTGTTAACCAG 614
Query 709 GTGGAGTGTCACCCATCGTGGCAACAAA-C-TG---A---A-----GCA---CT-----C 747
|||||||||||||| || |||||||||| | || | | ||| || |
Sbjct 615 GTGGAGTGTCACCCTTCATGGCAACAAAACGTGCTCAGGGATTTCTGCAAATCTAAAGGC 674
Query 748 GTTCACCTCTCTGGATACTCTCCGTTGGGTTGTCCAGGGACAACGTGGCT--C-A---A- 800
||||| ||||| || |||||||| ||||||| |||||| ||||||||||| | | |
Sbjct 675 GTTCATCTCTCAGGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGAT 734
Query 801 G-----A-GC-CCC-ATTCTAGGCTCG-GTTGCTGAGA-G---G--A---CTCCTGCGCA 842
| | | ||| ||||| || | | |||||||||| | | | ||||||| ||
Sbjct 735 GTTTTGAAGAACCCTATTCTTGG-TGGTGTTGCTGAGAAGCTCGGCAAGACTCCTGCACA 793
Query 843 AGTTGCATTACGTTGGGGTCTCCAAAAGGGGCAAAGTGTTCTTCCAGAAAGCACACATGA 902
||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||| |||||
Sbjct 794 GGTTGCATTACGCTGGGGTCTCCAAATGGGTCAAAGTGTTCTTCCAAAAAGCACCCATGA 853
Query 903 AGACACGATCAAACAGAATTTTGAT 927
||||| ||||||||||||||| |||
Sbjct 854 AGACAGGATCAAACAGAATTTCGAT 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5