BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915582
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45320.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 933 0.0
> AT5G45320.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: inflorescence meristem, root,
flower; EXPRESSED DURING: petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis
abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G26350.1);
Has 253 Blast hits to 253 proteins in 16 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:18362111-18363168 REVERSE LENGTH=955
Length=955
Score = 933 bits (505), Expect = 0.0
Identities = 570/601 (95%), Gaps = 5/601 (1%)
Strand=Plus/Plus
Query 1 ATGCCCAGATTGACTTCTCGTCACGGTACCACCAGTCCTCTCATCTGGTGTGCAGCTATC 60
||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||
Sbjct 116 ATGCCCAGATTGACTTCTCGTCATGGT---ACCAGTCCTTTCATCTGGTGTGCAGCCATC 172
Query 61 ATTTGTGCTATAATCTCTATTGTTGTAATCATTGGTGGCATTTTAGTCTTCGTTGGTTAC 120
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 173 ATTTGTGCCATAATCTCTATTGTTGTAATCGTTGGTGGCATTATAGTCTTCGTTGGTTAC 232
Query 121 ATGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCACGGATGCTCACCTCGACTTCTTA 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 233 CTGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCGCGGATGCTCACCTCGACTTCTTA 292
Query 181 AAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACAATTGTGATTCGCGTAGACAAT 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 293 AAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACGATTGTGATTCGCGTAGAGAAT 352
Query 241 CATAACGCTAAGGCTCATGCGTTGTTTGATGAAACCGAGTTCAAGCTAAGCTATGATGGG 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 353 GATAACGCTAAGGCTCATGCGTTGTTTGATGAAACTGAGTTCAAGCTAAGCTATGAAGGC 412
Query 301 AAACTTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGAAATCAATGTTC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AAACCTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGAAATCAATGTTC 472
Query 361 CTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACTTTGATGCAAGCTGTA 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 473 CTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACAATGATGCAAGCTGTA 532
Query 421 GACTATGCGGTTAAACAAGATGTTATTACGTTCGAGCTCAAAGGTGGCTCGAA-AACTCG 479
||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 533 GACTATGCGGTTAAAAAAGATGTTATTACTTTCGAGCTCAAAGGTGGCTC-AAGAACTCG 591
Query 480 GTGGCGAGTCGGACCATTAGGATCGGTCAAGTTCGAGTGTAACCTTAGCTGTGAGCTTAA 539
||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 592 GTGGCGAGTCGGACCATTAGGATCGGTTAAGTTTGAGTGTAACCTTAGCTGTCAGCTTAG 651
Query 540 GTTTAGACCTTCTGATCATAGTTACATTCCATCTCCGTGCACTTCTTCTCATAAGCATTA 599
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 652 GTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACCTCTGCTCATAAGCATTA 711
Query 600 G 600
|
Sbjct 712 G 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5