BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915594
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistanc... 606 2e-172
> AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistance
protein (TIR-NBS-LRR class) | chr5:18326203-18332609 FORWARD
LENGTH=4321
Length=4321
Score = 606 bits (328), Expect = 2e-172
Identities = 663/818 (81%), Gaps = 49/818 (6%)
Strand=Plus/Plus
Query 26 TCAACAAACCTCTGGCTTTTAGCTTCTGTGCGCCCTCACACGCGGACCAAAATTTTACAC 85
|||||||| ||| | |||| |||||| ||||||||||||| | | ||||| |||
Sbjct 2788 TCAACAAAGCTCCGACTTTCAGCTTCAGTGCGCCCTCACATACAAATCAAAACGCCACA- 2846
Query 86 CTTG-TCTGCAACCAGGATCTTCTGTAATGACACAACTAAATCCTTCTTGGAGAAACACG 144
||| ||||||| ||||||||||||||||||||| |||||||| ||| ||||| ||||||
Sbjct 2847 TTTGATCTGCAATCAGGATCTTCTGTAATGACACGACTAAATCATTCATGGAGGAACACG 2906
Query 145 CTTGTGGGTTTTGCTATGCTGGTGGAAGTTTCATTTTCAGAGG-CTTGCTGTGATGTTAC 203
|||||||| |||| |||||||||||||||| ||||| | |||| | | |||||||| |||
Sbjct 2907 CTTGTGGGATTTGGTATGCTGGTGGAAGTTGCATTTCCCGAGGAC-TACTGTGATGCTAC 2965
Query 204 TGGT-TTAGGCATACGTTGTGTTTGCAGATGGAAG-AACATGGCAGGCCGCTCTCAG-AG 260
| | || |||||| ||||||||||||||||| || |||| | |||||||||| | ||
Sbjct 2966 AGATGTT-GGCATAAGTTGTGTTTGCAGATGG-AGCAACAAAGAAGGCCGCTCT-TGTAG 3022
Query 261 TATAGAAAG-AAATTTGCATTGTTGGGCTA-CAGGGGAAGCTGTTCCAAAATTTCAAAAG 318
|||||||| |||||| ||||||||||| | || || ||| |||||||||| ||| ||||
Sbjct 3023 GATAGAAAGAAAATTT-CATTGTTGGGC-ACCATGGCAAGTTGTTCCAAAAGTTCGAAAG 3080
Query 319 GATCATATGTTTGTCTTCT-TTGATGTCAAAATGCGTCCAAGTACCGATGACGGAAATGA 377
||||||| ||||||||| | ||||||||| ||||| |||||||||| ||| ||||||||
Sbjct 3081 GATCATACGTTTGTCTT-TAGTGATGTCAACATGCGCCCAAGTACCGGTGAAGGAAATGA 3139
Query 378 GCCAGATGTATTCGCT-GATTTAGTTGTGTTTGAATTCTTTCCTGTCGA-CAGACAGAAG 435
|| ||| | | ||| || |||||||| ||||| ||||||||| || | ||| ||| |
Sbjct 3140 CCCTGATATCTGGGCTGGA-TTAGTTGTATTTGAGTTCTTTCCTATCAATCAG-CAG-AC 3196
Query 436 AAGCGGCGTCTAGATGATA-GTTGCATAGTGAAAAGATGTGGAGTCTC-TGCAATTGATG 493
|| | ||||| |||||| ||| || ||||| ||||||||||||| | || ||| |||
Sbjct 3197 AA--AGTGTCTAAATGATAGGTT-CACAGTGAGAAGATGTGGAGTC-CGTGTAATAAATG 3252
Query 494 CTGCAACTGGCGAA-ACAAGTCTTAAGATGAGT-TCATC-AGATTCTT-T-TTTGCATAA 548
|||||||||| || ||||||||| ||| | | || | || || || | |||| ||
Sbjct 3253 TTGCAACTGGC-AATACAAGTCTTGAGAACA-TAGCA-CTAG-TT-TTGTCTTTGGAT-C 3306
Query 549 TA-AAAAAG-TT---G--AAGAAAT-TTCAAGAAACAGCTATGATGGTTTACAGGAGATG 600
| | | | || | | ||| | || ||| ||||||||||| |||||||||||||
Sbjct 3307 CAGTAGAGGTTTCCGGTTATGAAGTATT-GAGAGTCAGCTATGATGATTTACAGGAGATG 3365
Query 601 GATAAAGTTCTATTTCTTTACATGGCATGTTTGTTCAATGACGAGGATATTGATTTGGTG 660
||||||||||||||||||||||| || | ||||||||||||||||||| ||||||| |||
Sbjct 3366 GATAAAGTTCTATTTCTTTACATAGCGTCTTTGTTCAATGACGAGGATGTTGATTTTGTG 3425
Query 661 GCACCACTTATTGCCAACATTGACATGGATGTTAGCTTTGGGATCAAGGTCTTAGCCGGT 720
||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||| |
Sbjct 3426 GCACCACTTATTGCCGGTATTGACTTGGATGTTAGCTCTGGGCTCAAGGTCTTAGCCGAT 3485
Query 721 AG-GTCTCTCATACGTGTATCATCTAATGGGGAAATAGTGATGGATTCTTTGCCACGACG 779
| |||||||||| |||||||||| |||||||||||||||||| || ||||| | |||
Sbjct 3486 -GTGTCTCTCATAAGTGTATCATCAAATGGGGAAATAGTGATGCATAGTTTGCAAAGACA 3544
Query 780 AATGGGTAAAGAAATCCTGCATACAGAATCCATGCTGC 817
|||||||||||||||||| ||| | ||||||||||||
Sbjct 3545 AATGGGTAAAGAAATCCTCCATGGACAATCCATGCTGC 3582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93423214245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5