BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915595
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45060.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 448 8e-125
AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-N... 276 4e-73
AT5G45276.1 | Symbols: | unknown pseudogene | chr5:18338754-18... 241 1e-62
AT5G17880.1 | Symbols: CSA1 | disease resistance protein (TIR-N... 110 4e-23
AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 65.8 9e-10
> AT5G45060.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18182038-18186495 FORWARD LENGTH=3926
Length=3926
Score = 448 bits (242), Expect = 8e-125
Identities = 389/458 (85%), Gaps = 18/458 (4%)
Strand=Plus/Plus
Query 368 AGCCAAAATCAA-TCAGCAGCTTCTCGGTGGCATGCACCTTTACGATAAAAGTTCAAGAA 426
|||||| ||||| ||||| ||||||||||| |||||||||||| ||||||| | ||||
Sbjct 2947 AGCCAAGATCAACTCAGCTGCTTCTCGGTGACATGCACCTTTAAAATAAAAGCTGAAGAC 3006
Query 427 AAGTCTTGGATCCCCTTTACTTGCCAGGTAGGAAGTT-G----G-GAGGGAGACAAGGAA 480
||||||||| ||||||||||||||| |||||||| || | | |||||| ||||| ||
Sbjct 3007 AAGTCTTGGGTCCCCTTTACTTGCCCGGTAGGAATTTGGACTAGAGAGGGAAACAAGAAA 3066
Query 481 GACAAGATTGAGTCAGATCATGTTTTTATAGCCTACATTACTTGCCCACATACGATAAGG 540
|||| ||||||||| ||||||||||| ||||||||||||| | |||||||| | ||||||
Sbjct 3067 GACAGGATTGAGTCGGATCATGTTTTCATAGCCTACATTAGTAGCCCACATTCAATAAGG 3126
Query 541 TGTCTCGAAGATG-AGAACTCTGATAAATGCAATTTTACTGAAGCCTCTCTTGAGTTTAA 599
||||||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 3127 TGTCTCGAAGA-GAAGAACTCTGATAAATGCAATTTTAGTGAAGCCTCCCTTGAGTTTAC 3185
Query 600 TGTGACTGGTGGTACAAGTCAG-ATAGGAACATTCAAGGTGTTGAAGTGTGGTTTAAGTT 658
||||| ||| ||||||| | || ||| ||||||||| ||||||||||| || ||||
Sbjct 3186 GGTGACAAGTGATACAAGT-GGTATTGGAGTATTCAAGGTTTTGAAGTGTGGATTGAGTT 3244
Query 659 TGGTGTATGCAAAGGATAAAGACAAAAACAGTTCTCTTGAGGCAAAGTATGATATGCCTG 718
||||||||| ||| || ||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 3245 TGGTGTATGAAAATGACAAAAACAAAAACAGTTCTCTTGAGGCAAAGTATGATGTTCCTG 3304
Query 719 TTGAAGTAAGCTTTCAAGAACCTCAACAGGGGATGAA-GGAGGAGCAAAGAAA-ACTTAA 776
||||||| |||||||||||||| |||| ||||| || ||||||| | ||| | | | ||
Sbjct 3305 TTGAAGTGAGCTTTCAAGAACCAGAACACGGGAT-AATGGAGGAGGAGAGATATA-TAAA 3362
Query 777 -AAA-GCAAGAATTCATGATAGACGACCAAAGAAGAAG 812
||| | ||||| | |||||||||||||||| ||||||
Sbjct 3363 CAAAAG-AAGAAGTGATGATAGACGACCAAAAAAGAAG 3399
> AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18321914-18326022 REVERSE LENGTH=3654
Length=3654
Score = 276 bits (149), Expect = 4e-73
Identities = 336/422 (80%), Gaps = 30/422 (7%)
Strand=Plus/Plus
Query 370 CCAAAATCAA-TCAGCAGCTTCTCGGTGGCATGCACCTTT-ACGATAAAAGTTCAAGAAA 427
|||| ||||| ||||| |||| || ||| | ||||||||| | | |||||| | |||| |
Sbjct 3027 CCAAGATCAAGTCAGCCGCTTGTCAGTGACCTGCACCTTTAAAG-TAAAAGATGAAGACA 3085
Query 428 AGTCTTGGATCCCCTTTACTTG-CCAGGTAGGAAGTTGG----G--AGGGAGACAAGG-A 479
|||||||| || | | |||||| ||| |||||||||||| | | |||| | || |
Sbjct 3086 AGTCTTGGGTCGCATATACTTGTCCA-GTAGGAAGTTGGACCAGACATGGAGGC-GGGAA 3143
Query 480 AGACAAGATTGAGTC-AGATCATGTTTTTATAGCCTACATTACTTGCCCACATACGATAA 538
||| ||||||||| | ||| ||||| || || | |||| | |||||||||||| ||||
Sbjct 3144 AGATAAGATTGAG-CTAGACCATGTCTTCATTGGATACACCAGTTGCCCACATACTATAA 3202
Query 539 GGTGTC-TCGAAGATGAG-AACTCTGATAAATGCAATTTTACTGAAGCCTCTCTTGAGTT 596
|||| | ||||| | | ||||| ||| |||||||| ||| |||||||||||| | ||
Sbjct 3203 AATGTCAT-GAAGAAG-GTAACTCAGATGAATGCAATCCTACCGAAGCCTCTCTTAAATT 3260
Query 597 TAATGTGACTGGTGGTACAAGTCAG-ATAGGAACATTCAAGGTGTTGAAGTGTGGTTTAA 655
|| |||||| || ||||||||| || || |||| || |||||||||||||||||||||||
Sbjct 3261 TACTGTGACAGGAGGTACAAGTGAGAAT-GGAAAATACAAGGTGTTGAAGTGTGGTTTAA 3319
Query 656 GTTTGGTGTATGCAAAGGATAAAGACAAAAACAGTTCTCTTGAGGCAAAGTATGATATGC 715
||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| |||||||
Sbjct 3320 GTTTGGTGTATGCTAAGGATAAAGACAAAAATAGTGCTCTTGAAACAAAGTACGATATGC 3379
Query 716 CTGTTG-AA-GTAAGCTTTCAAGAACCT-CA-ACAGGGGATGAAGGA-GGAGCAAAGAAA 770
| ||| || | | ||||||||||| || || | ||||| ||| ||| || | |||||||
Sbjct 3380 TTATTGGAAAG-A-GCTTTCAAGAAACTTCAGA-AGGGGTTGATGGAAGG-GTAAAGAAA 3435
Query 771 AC 772
||
Sbjct 3436 AC 3437
> AT5G45276.1 | Symbols: | unknown pseudogene | chr5:18338754-18340436
REVERSE LENGTH=1527
Length=1527
Score = 241 bits (130), Expect = 1e-62
Identities = 168/186 (90%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 978 AGCGGACCTTATTGCCAAACTCATGTTTCGTAAAGAAAACTCAACACCACCTGTGCTTCA 1037
||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 1150 AGCGGACCTTATTGCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCA 1209
Query 1038 TTGCTCCGTTGAAGCACCAAGCTCTTCAGGCAA-TGGTGGGTCTTCAGGTTCAAGGGTTG 1096
|||||| ||||||||||||||| | |||| ||| |||||||||||||||||||||||| |
Sbjct 1210 TTGCTCTGTTGAAGCACCAAGCCCATCAG-CAAATGGTGGGTCTTCAGGTTCAAGGGTGG 1268
Query 1097 GACTTCAGGTTCCTAAAC-AGGAGACTGAACCCTTCGTGAACCCATCAGCCTATGGTTGG 1155
|||||||||||||||||| || ||||| || ||||||||||||||||| | ||||| ||
Sbjct 1269 GACTTCAGGTTCCTAAACGAG-AGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGG 1327
Query 1156 TTTTAA 1161
|| |||
Sbjct 1328 TTCTAA 1333
> AT5G17880.1 | Symbols: CSA1 | disease resistance protein (TIR-NBS-LRR
class) | chr5:5908874-5913099 REVERSE LENGTH=3597
Length=3597
Score = 110 bits (59), Expect = 4e-23
Identities = 106/128 (83%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 47 TTTTC-C-ACTTAACATGGCTGGACTTGAAGTATTCTACGAGTCTTACACTTGTTCCAGA 104
||||| | |||| | |||||| | |||||||||| || || |||||||| ||||||| |
Sbjct 2590 TTTTCTCAACTTCA-ATGGCTTCATTTGAAGTATTGTAAGAATCTTACACATGTTCCACA 2648
Query 105 G-TTGCCACCAAATCTTCCCTACTTAGATGCACAGGGTTGTAGCTCACTGAAGACAGTTG 163
| || ||||||||||||| || ||| | | || |||||||||||||||||||||||||
Sbjct 2649 GCTT-CCACCAAATCTTCAGTATTTAAACGTTCATGGTTGTAGCTCACTGAAGACAGTTG 2707
Query 164 CAAAACCG 171
||||||||
Sbjct 2708 CAAAACCG 2715
> AT5G45240.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:18313706-18319089 FORWARD LENGTH=2439
Length=2439
Score = 65.8 bits (35), Expect = 9e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 1 ATGGAAGTCCATGTGTCTGGAAGTCTTTCAAAACT 35
|||||||||||||||||||||||||||||||||||
Sbjct 1994 ATGGAAGTCCATGTGTCTGGAAGTCTTTCAAAACT 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5