BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915596
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45275.1 | Symbols: | Major facilitator superfamily protein... 931 0.0
AT4G19450.1 | Symbols: | Major facilitator superfamily protein... 549 2e-155
> AT5G45275.1 | Symbols: | Major facilitator superfamily protein
| chr5:18334405-18337380 REVERSE LENGTH=1924
Length=1924
Score = 931 bits (504), Expect = 0.0
Identities = 542/561 (97%), Gaps = 0/561 (0%)
Strand=Plus/Plus
Query 103 GTGTTTCTATGTTGTTTACTAGCTGGGCTAAGTATTTGTTGGTTTAACACAGTCTGCTTT 162
|||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 450 GTGTTTCTGTGTTGTTTGCTAGCTGGGCTAAGTATCTGTTGGTTCAACACAGTCTGCTTT 509
Query 163 GTGCTCTGCATCAGAAACTTTCCTGCAAACAGATCACTTGCTCTTTCTCTCACAGTGAGC 222
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 510 GTGCTCTGCATCAGAAACTTCCCTGCAAACAGATCACTTGCACTTTCTCTCACAGTGAGC 569
Query 223 TTTAATGGCGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATCAATCCTGTTTCT 282
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TTTAATGGTGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATCAATCCTGTTTCT 629
Query 283 ACAGAGCTATACCTACTTTTAAACGCTCTTGTACCTCTTTTTGTCTCATTCGCTGCTCTC 342
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 630 ACAGAGCTATACCTACTCTTAAACGCTCTTGTACCTCTTTTTGTCTCATTTGCTGCACTC 689
Query 343 ATTCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCCGATGGAGTTCGAAGAGAC 402
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 690 ATCCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCAGATGGAGTTCGAAGAGAC 749
Query 403 TCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTGTTTATCTGCTTCTC 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTGTTTATCTGCTTCTC 809
Query 463 TTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTAGTGGATCAATACTT 522
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 810 TTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTGGTGGATCAATACTT 869
Query 523 CTCTTGATTCTTCCTCTATGCCTTCCTGGTCTAGTCTATGCTCGTAATTGGTATCTACAC 582
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 870 CTCTTGATTCTTCCTCTATGCCTCCCTGGTCTAGTCTACGCTCGCAATTGGTATCTACAC 929
Query 583 AATATCCACTCCAGTTTCCGTTTAGAAGGTTCTGGTTTCATTCTTGTTGATGTTGATGAG 642
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AACATCCACTCCAGCTTCCGTTTAGAAGGTTCTGGTTTCATTCTTGTTGATGTTGATGAG 989
Query 643 CTTGAGATGCATAAGGGAATG 663
|||||||||||||| ||||||
Sbjct 990 CTTGAGATGCATAAAGGAATG 1010
Score = 392 bits (212), Expect = 4e-108
Identities = 252/271 (93%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 683 GTTGTTGCACTAAGTTCATTACAAGAAATCAGCTTGGGATGCTT-GGAGAGGAACATCCT 741
|||||||||| ||| |||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 1117 GTTGTTGCACAAAGGTCATTACAAGAAATCAGCTTGGAATG-TTGGGAGAGGAACATCCT 1175
Query 742 CTATCTTTACTCTTATGCAGATCAGACTTCTGGCTTTACTATATTGCCTATTTTTGTGGT 801
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1176 CTATCTTTCCTCTTATGCAGATCAGATTTCTGGCTTTACTATATAGCCTATTTTTGCGGC 1235
Query 802 GGCACAATTGGACTTGTTTATAGCAACAACCTGGGACAGATTGCACAATCTTTAGGTA-A 860
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 1236 GGCACGATTGGACTGGTTTACAGCAACAACCTGGGACAGATTGCACAATCTTTAGG-ACA 1294
Query 861 AAAATCTGAGACAACAACTCTTGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTCGATT 920
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1295 AAGCTCTGAGACAACAACTCTTGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTAGATT 1354
Query 921 GCTTTCAGCAACACCAGACTATATCAGAGCG 951
||||||||||||||||||||||||||||||
Sbjct 1355 ACTTTCAGCAACACCAGACTATATCAGAGCG 1385
Score = 351 bits (190), Expect = 7e-96
Identities = 206/214 (96%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 1152 AGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTTATATG 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 AGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTTATATG 1699
Query 1212 TATGGGACGAGACTGTTACCTCCTAACGTTTGTGTGGTGGGGATGCTTGTTGGTGATTGG 1271
||||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||
Sbjct 1700 TATGGGAAGAGACTGTTATCTCCAAACGTTTATGTGGTGGGGATGCTTGTCGGTGATTGG 1759
Query 1272 ACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACTAGACGAGCCTATCAACGTTTTGAACA 1331
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1760 ACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAGACGAGCCTATCAACGTTTTGAACA 1819
Query 1332 AGATAGGATAACTTCAAGCATGCTCTATTCTTAG 1365
|||| |||||||||| ||||||||||||||||||
Sbjct 1820 AGATCGGATAACTTCCAGCATGCTCTATTCTTAG 1853
Score = 156 bits (84), Expect = 6e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1056 TGCTCTTTTACCAACCACAATTGCTCTATACTTGTTGCCATCATCAGGAAGCTTGGCAGC 1115
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 1421 TGCTCTTTTACCAACCACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGC 1480
Query 1116 GTTACAAGCAGGAACAGCTCTAATCGGTCTAAGTTC 1151
||||||||||||||| ||||||||||||||||||||
Sbjct 1481 GTTACAAGCAGGAACTGCTCTAATCGGTCTAAGTTC 1516
> AT4G19450.1 | Symbols: | Major facilitator superfamily protein
| chr4:10606453-10609335 FORWARD LENGTH=1921
Length=1921
Score = 549 bits (297), Expect = 2e-155
Identities = 479/566 (85%), Gaps = 15/566 (3%)
Strand=Plus/Plus
Query 103 GTGTTTCTATGTTGTTTACTAGCTGGGCTAAGTATTTGTTGGTTTAACACAGTCTGCTTT 162
|||||||| ||||| ||||| ||||| ||||||| |||||||| ||||| |||||||||
Sbjct 395 GTGTTTCTCTGTTGCTTACTTGCTGGTTTAAGTATCTGTTGGTTCAACACTGTCTGCTTT 454
Query 163 GTGCTCTGCATCAGAAACTTTCCTGCAAACAGATCACTTGCTCTTTCTCTCACAGTGAGC 222
||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 455 GTGCTCTGCATTAGTAACTTCCCTGCAAACAGATCACTTGCTCTTTCCCTCACAGTGAG- 513
Query 223 TTT-AATGGCGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATCAATCCTGTTTC 281
||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 514 TTTCAATGGTGTAAGCGCTGCTTTATATACTCTTGCTTACAACGCAATCAATCCAACTTC 573
Query 282 TACAGAGCTATACCTACTTTTAAACGCTCTTGTACCTCTTTTTGTCTCATTCGCTGCTCT 341
| |||||||||| || ||||| ||||||||| |||| || ||||||| ||| ||||| |
Sbjct 574 TCCAGAGCTATATCTTCTTTTGAACGCTCTTATACCGCTCATTGTCTCTTTCACTGCTAT 633
Query 342 CATTCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCCGATGGAGTTCGAAGAGA 401
||| || |||||||| ||||||||| |||| ||||||||||| ||||||||||| | ||
Sbjct 634 CATCCCGATTCTTCGTCAACCGCCTTTTGAGCCTCTTCCACCAGATGGAGTTCGTCGTGA 693
Query 402 CTCTCTCATGTTTCTATTGCTTAACATATTAGC-GGTCTTGAACGGTGTTTATCTGCTTC 460
||||||||||||||||||||| |||||| | || | | || |||||||||||||| ||||
Sbjct 694 CTCTCTCATGTTTCTATTGCTCAACATACTCGCTGCT-TTAAACGGTGTTTATCTCCTTC 752
Query 461 TCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTAGTGGATCAATAC 520
||||| | ||||| | |||||| |||| || |||||||| |||||| ||||| |||| |
Sbjct 753 TCTTTGGATCAAACTCCTCTGATTTAACCTCTGCTCGTCTACTCTTTGGTGGAGCAATCC 812
Query 521 TTCTCTT-G-ATTCTTCCTCTATGCCTTCCTGGTCTAGTCTAT-GCTCGTAATTGGTATC 577
| ||||| | |||| ||| |||| |||| ||| ||||| || || || |||||||||
Sbjct 813 TCCTCTTGGTATTC--CCTTTATGTATTCCCGGTTTAGTC-ATCGCCCGGAATTGGTAT- 868
Query 578 TA-CACA-ATATCCACTCCAGTTTCCGTTTAGAAGGTTCTGGTTTCATTCTTGTTGATGT 635
| | || | |||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 869 AACCGCACA-ATCCACACTAGTTTCCGTCTAGAAGGTTCTGGTTTCATTCTTGTTGATCC 927
Query 636 TGATGAGCTTGAGATGCATAA-GGGA 660
||||||||||||| ||||||| ||||
Sbjct 928 TGATGAGCTTGAGTTGCATAAAGGGA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5