BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915600
Length=3507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 2795 0.0
> AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18302147-18308303 REVERSE LENGTH=3696
Length=3696
Score = 2795 bits (1513), Expect = 0.0
Identities = 2873/3508 (82%), Gaps = 179/3508 (5%)
Strand=Plus/Plus
Query 36 ACCACAAGTGTTCATCAACTTCCGAGGAGAAGAGCTGCG-TAGACCCTTCGTCTCCCATC 94
|||||||||||| ||||| ||||||||||| ||||| || ||| ||||| |||||||||
Sbjct 30 ACCACAAGTGTTTATCAATTTCCGAGGAGATGAGCTACGCAAGA-CCTTCATCTCCCATC 88
Query 95 TCCAT-GAAGCATTGAGAA-ATG-TCGGGATCAATGCTTTTATTGACTCAGATGAGGATC 151
||||| ||| |||| || | | ||||||||||||||||| ||||| ||||| | |
Sbjct 89 TCCATAAAAG-ATTG-CAACGCGAT-GGGATCAATGCTTTTATAGACTCTGATGAAGCTG 145
Query 152 CGGGCGAAGATCTTGAAAACCTTTTCAAAAGGATCGAGGAGTCGGAGATCGCGCTGGCGA 211
|||||||| || ||||||||||||||||||| ||| | ||||||||||| ||||||
Sbjct 146 TTGGCGAAGAACTCAAAAACCTTTTCAAAAGGATTGAGAATTCGGAGATCGCACTGGCGG 205
Query 212 TTTTATCGAGCAAGTACACGGAGTCACAATGGTGTTTGGACGAGCTGGTGAAGATAATGG 271
|||||||||| | ||||||||||||||| ||||||||| | ||||| || ||||| ||||
Sbjct 206 TTTTATCGAGTAGGTACACGGAGTCACATTGGTGTTTGCAGGAGCTAGTTAAGATGATGG 265
Query 272 AATGTAGT-TCAAAAGGGGAAGGATGC---AAAAAACTCTGGGTCATTCCAATCTTCTAC 327
|||||||| | ||||| ||||||||| |||||| | | |||||||||||| || |||
Sbjct 266 AATGTAGTAT-GAAAGGTGAAGGATGCAATAAAAAATTATTGGTCATTCCAATTTTTTAC 324
Query 328 AAGCTTG-ACACA-TCTATTGTGAAAGGA-CTTGATGGTGATTTTGGT-GTTAATCTATG 383
|||| || | | | | | |||||| || |||||||| ||||| ||| | |||||| ||
Sbjct 325 AAGC-TGAAGATAGAC-ACGGTGAAA-GAGCTTGATGGAGATTTCGGTCG-TAATCTGTG 380
Query 384 GAAGCTGTGGACGAAGCCAGG-T--GGT-GT--TCGAGACGA-CCGGATTGTTAAGTGGA 436
| | || |||| |||||| || | ||| || ||||||| | |||||||||||||||||
Sbjct 381 GGATCTCTGGAGGAAGCCGGGTTGCGGTCGTGATCGAGAC-AGCCGGATTGTTAAGTGGA 439
Query 437 ACGCGGCTTTGCAGGA--TGCCCGGAACA-AAACAGCTTTAATATTGAAAGAAAGC-AGT 492
||| ||||||| || | | | | | || ||| || || |||| ||||| | |
Sbjct 440 ACGAGGCTTTGAAGTACTTTCTC--AGCAGAAA-TGCCTTGGTATTTTCAGAAA-CTGGA 495
Query 493 GAGGAA-ATGGCTTTTC-TGGCAAAGATTGTCATAAC-TGTTCAGAATGCCTTAACACGA 549
||||| | || ||| || | | ||| | || || |||| | |||||| ||| | |
Sbjct 496 AAGGAAGA-GG-AATTCGTGTCTACGATCGCCA-CACATGTTAAAAATGCCCTAA-GCAA 551
Query 550 AATT-CGCCGCAAAGTCAAGAAGACACTAGGTCACCACCACCGTCACAGGGAGGAGGAAG 608
|||| |||||||||| |||| | || | | ||||| | | | |||| |||||
Sbjct 552 AATTACGCCGCAAAGAGGAGAA-A-AC-CCG--A-AACCACAG--A-AAGGAGCAGGAA- 601
Query 609 AGGAGAAGAAATCCC-TAAATTTCATAGCAGAGCATTAAGCAGAACTGAATCAGGA-GAA 666
| ||| ||| ||| ||| |||||||||| || || |||||| || || ||
Sbjct 602 ACCCTAAG---CCCCAAAAAATTCTTAGCAGAGCAGCAAACATTACTGAACCA-GAGGAT 657
Query 667 CAACGTCTTAAGCAATTGGAAGAGAAA-TTGGATGTTGACTGCAATGACAACGAAACTCG 725
||||| ||||||||| | | || ||| ||| |||| || ||||||||||||||||||||
Sbjct 658 CAACGCCTTAAGCAACTAGCAG-TAAAGTTGAATGTGGAGTGCAATGACAACGAAACTCG 716
Query 726 TATTGTCGCAGTCGTTGGGATGCCTGGGATCGGTAAAACCTATCTCGCCAAGAAACTCTT 785
|||||| | |||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 717 TATTGTTGAAGTCGTAGGGATGCCCGGAATCGGCAAAACCTATCTCGCCAAGAAACTCTT 776
Query 786 GGCCAAGCTTGAGACGAAGATTGTCCGTCACGTGTTTATCCAGTTCGATAGTGAGAGAT- 844
||||||||| ||| |||||| || | ||||| ||| ||||| | || | |||||
Sbjct 777 CGCCAAGCTTAAGAAGAAGATCAACCATTGTGTGTTCATCGAGTTC-A-AGCGTGAGATG 834
Query 845 CCA-AGTATCAGGGATTGGAATGGGTGCAGAAGACAATTGTGGAAGATTTGTTGAAGAAA 903
|| | | || |||| || ||| | ||||||| | ||||||||| |||| | |
Sbjct 835 TCAGCGGAGCAAGGATCAGAGTGGCTACAGAAGAGACTTGTGGAAGGTTTGCT---G--- 888
Query 904 GATTATCCAA-CTTCAGGATCCGAGGGTGGC-AATGTGCTTGAAAATTGGAAGGAACAGC 961
|| ||| ||| || | | |||| | | |||| ||||| |||||||| | |||
Sbjct 889 GA-TATTCAAGATT--GCA-CCGA---T-ACAAATGCACTTGAGGTTTGGAAGG-ATAGC 939
Query 962 -TACGCGAGAAGAAAATTGTGGTTGTTTTCGATAATGTGACTGATC-AGAAACAG--AT- 1016
|| ||| |||||| | ||| ||||||||||| |||||| ||| | | |||||| ||
Sbjct 940 TTAATCGACAAGAAAGTCGTGATTGTTTTCGATGATGTGAGTGA-CAAAAAACAGATATC 998
Query 1017 CGAACCGC-T--GGAGAAT-TGCGATTGGATTAAGAAGGGAAGCAGGATCGTTATCACGA 1072
|||||| | | || | || ||||| |||||||||||||| |||| |||||| |||||||
Sbjct 999 CGAACCACTTAAGG-GTATCTGCGACTGGATTAAGAAGGGGAGCATGATCGTCATCACGA 1057
Query 1073 CACGGGACAAGTCGTTGACGGAGACG-TTACCT-TGTGATCTCTATGAGGTCCCTGGGTT 1130
||||||||||||| ||||| ||| | ||| | |||||| ||||| |||||||||||
Sbjct 1058 CACGGGACAAGTCATTGACTGAG-GGATTA-GTCACTGATCTTTATGAAGTCCCTGGGTT 1115
Query 1131 GAATGACAAAGATAGTTTGGAGTTCTTTAGGTCTCAAATTTGTAGTAATCTCGAGGGAAA 1190
|||||| | ||| | || ||| |||||||| ||||| | ||| ||||| | || |||||
Sbjct 1116 GAATGAGAGAGACGGCTTAGAGCTCTTTAGGGCTCAAGTCTGTTGTAATATTGAAGGAAA 1175
Query 1191 TTTCATGGAGCTGTCTAGGAAGATAGTGGATTTTGCTGGTGGTAACCCATTAGCTCTCGA 1250
|||||||||||| ||||| ||| | ||||||||||| | || ||||| |||||||||||
Sbjct 1176 TTTCATGGAGCTATCTAGAAAGTTTGTGGATTTTGCACGAGGCAACCCCTTAGCTCTCGA 1235
Query 1251 GGCATTTGGTAAGGAGCTTAAG-AAG-AAGAGTGAGGATTGCTGGGAAAAAAGACTTGGA 1308
|| ||| |||||||||||| | | |||| |||| | |||||||| |||||||||
Sbjct 1236 GGAATTCGGTAAGGAGCTT-CGCGGGAAAGA-CGAGGCTCACTGGGAAACAAGACTTGGG 1293
Query 1309 ACACTGACTCGAG-TTTCCAGT-GAAGAGAT--GAGAGAGGTCTTGAGAAACATTTTTGA 1364
|||||| | | || ||||| | || ||| |||||| | | | |||| | | || |
Sbjct 1294 ACACTGGCAC-AGCATTCCAATCCAA-CGATCAGAGAGAAG-C-TAAGAAGC--TCTT-A 1346
Query 1365 AAAGGATCTTGATGAGAAGCAGAGGGAAGCGTTTCTTGATATTGTTTGTTTCTTTAGATC 1424
| || || | ||| |||||| ||| |||||||||||||| | || ||||||||| ||
Sbjct 1347 TGATGAACTAAACGAGCAGCAGAAGGATGCGTTTCTTGATATAGCTTATTTCTTTAGGTC 1406
Query 1425 ACATGATGAGAGCTATGTAACAAGTTTGCTGGATTCTGT-TGACCCCAAATCTGCTGAAG 1483
||| ||||||||||| || | |||||| || |||||| | |||||| |||| || |||
Sbjct 1407 ACAAGATGAGAGCTACGTTAGAAGTTTACTTGATTCT-TATGACCCTGAATCCGCGGAAT 1465
Query 1484 CTGGGAGAGAAGAAGTTAGAGATCTTGTGGACAAGTTCTTGATTCACATCTCTAATGGTC 1543
|| | | ||||| ||||||| || | ||||| ||||||||| | | | | ||||||
Sbjct 1466 CT--G-GTCAAGAATTTAGAGACCTCGCAGACAAATTCTTGATTGGCGTGTGTGATGGTC 1522
Query 1544 GAGTAGAGATTCATGATATATTGTTTACTATGGGCAAGGA-ACTTGTTG-AG--ACTACA 1599
|||| ||||| |||||| |||| ||||| |||| |||||| | |||||| || ||| ||
Sbjct 1523 GAGTTGAGATGCATGATCTATTATTTACAATGGCCAAGGAGA-TTGTTGAAGCTACTGCA 1581
Query 1600 AATAAATATTGGA-TGTTGTC-GTCGAATTCTGCAGTGTCTG----CT---GA--TG-CA 1647
| |||| || ||||| | ||||| || ||||| || || | || || |
Sbjct 1582 GAGAAAT-CAAGATTGTTG-CTGTCGAGTTGTGCAGAGT-TGAAAAATAAAGAGTTGTCT 1638
Query 1648 CTGAGAAAGAAAAGGGGAAGAGATC-AGGTTAGAGGAATTGTCATAGACATGTCTAAAAT 1706
|| | | || | ||||||||| | |||||||||||||||| ||||||||||| ||||
Sbjct 1639 CT-TG-ATCAACA-GGGAAGAGA-CAAGGTTAGAGGAATTGTTTTAGACATGTCTGAAAT 1694
Query 1707 GGAGGAAATGCCCTTAGACA-ACCAAACATTTGTTGGTATGAGCAGCCTACGGTACCTTA 1765
|||||||| ||||||| | | | | | ||||| ||||||||||| ||||||||||| |
Sbjct 1695 GGAGGAAAAGCCCTTAAAGAGAGC-AGTTTTTGTCGGTATGAGCAGTCTACGGTACCTGA 1753
Query 1766 AAGTGTACAATTCTCTTTGTCCTAGGCATTGTGAAGCTCG-GTGCAAGTTAAACTTACCG 1824
|||| |||| |||||||||||||| || | | || || | |||||||||| |||||||
Sbjct 1754 AAGTCTACAGTTCTCTTTGTCCTACTCACTCTAAAACT-GAGTGCAAGTTACACTTACCT 1812
Query 1825 GATGAACTTGAGTTCCCAAAAAATAATATTATACGATATCTTGACTGGATGAACTTCCCA 1884
|||| |||||| || |||||| |||||||| | |||| |||| ||||| |||| || |||
Sbjct 1813 GATGGACTTGAATTTCCAAAAGATAATATTGTCCGATGTCTTCACTGGGTGAAATTTCCA 1872
Query 1885 GGGA-AGGAACTTCCATCAGAATTCGAACCCAAGGATCTTATTGATCTTAGGTTGCCTTA 1943
|||| | ||||||||| |||| || | ||||| |||| || ||||||||||| |||||
Sbjct 1873 GGGACA-GAACTTCCACCAGACTTTTACCCCAATAATCTCATCGATCTTAGGTTACCTTA 1931
Query 1944 CAGCAAGATTATTAGCT-TATGGAATCGTGT--TAAGGATACACCAAGAT-TGAAGTGGG 1999
|||||| |||| | || ||||| | | ||| ||||| | |||| | || |||||||||
Sbjct 1932 CAGCAATATTACCA-CTCTATGG-AGC-TGTACTAAGGTTGCACCTA-ATCTGAAGTGGG 1987
Query 2000 TGGATCTAAGTCACTCGAGTAAGTTGAGTTCCTTG-TCAGAATTATCAGAAGCACCAAAT 2058
| ||||| || ||||||||||| |||| ||||||| | | ||||||||||||||||||
Sbjct 1988 TTGATCTCAGCCACTCGAGTAACTTGAATTCCTTGAT-GGGTTTATCAGAAGCACCAAAT 2046
Query 2059 CTTTTGAGATTAAATCTGGAAGGCTGCACGAGTTTGAAGGAATTCCCAGAGGCGATGCAA 2118
||||||||||||||||| ||||||||||| ||||| ||||| || || || | |||| ||
Sbjct 2047 CTTTTGAGATTAAATCTTGAAGGCTGCACAAGTTTAAAGGAGTTACCTGATGAGATG-AA 2105
Query 2119 A-AGATGAAGAATCTCGTTTTCCTGAACTTAAGAGGATGCACAAGTCTCTTGTCTCTGCC 2177
| | |||| |||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2106 AGATATGACGAATCTTGTTTTCCTGAACTTAAGAGGATGCACAAGCCTCTTGTCTCTACC 2165
Query 2178 AAAGATAACTATGGATTCCCTGAAGACTCTCATTCTCAGCGACTGCTCACA-ATTTCAGA 2236
|||||| |||| | ||||| |||||||||||||||| |||| ||||||| | |||||||
Sbjct 2166 AAAGATCACTACGAATTCCTTGAAGACTCTCATTCTTAGCGGCTGCTCA-AGCTTTCAGA 2224
Query 2237 CATTTGAGGTGATTTCAGAACATCTGGAAACTCTGTACTTAAACGGCACTGCGATAAATG 2296
||||||||||||||||||||||||| || |||| |||||||||||||| | ||||||||
Sbjct 2225 CATTTGAGGTGATTTCAGAACATCTAGAGTCTCTATACTTAAACGGCACAGAGATAAATG 2284
Query 2297 GACTTCCTTCAGCCATTGGTAATCTCGACAGACTTATCTTATTGAACTTGATAGACTGCA 2356
|||||||| ||||||||||||||||| | ||||||||||| || || |||| ||| ||||
Sbjct 2285 GACTTCCTCCAGCCATTGGTAATCTCCATAGACTTATCTTTTTAAATTTGAAAGATTGCA 2344
Query 2357 AAAATCTGGTGACTCTTCCTGATTGTCTTGGGAAGCTTAAATCTCTTCAAGAACTCAAAC 2416
||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2345 AAAATCTAGCGACTCTTCCTGATTGTCTTGGGGAGCTTAAATCTCTTCAAGAACTCAAAC 2404
Query 2417 TCTCTCGCTGCTCAAAGCTCAAACCCTTCCCCGATGTTACAGCGAAAATGGAAAGTTTGC 2476
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2405 TCTCTCGCTGCTCAAAGCTCAAAATTTTCCCCGATGTTACGGCGAAAATGGAAAGTTTGC 2464
Query 2477 GGGTTTTACTTCTTGATGGAACATCAATAGCAGAGATGCCAGGCAGCATTTATGACTTAT 2536
||||||||| || ||||| ||||||||||||||| ||||| ||||||||| | ||||||
Sbjct 2465 TGGTTTTACTGCTCGATGGGACATCAATAGCAGAGTTGCCATGCAGCATTTTTCACTTAT 2524
Query 2537 CTT-TGCTGCGACGTCTATGCTTAAGCAGGAATGATGATATCCGCACCCTTCGATTTGAC 2595
||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2525 CTTCT-CTGCGACGTCTATGCTTAAGCAGGAATGATAATATCCGCACCCTTCGATTTGAC 2583
Query 2596 ATGGGTCAAATGTTCCATCTGAAGTGGCTCGAGTTAAAGTATTGTAAGAATCTCACATCT 2655
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2584 ATGGGTCACATGTTCCATCTGAAGTGGCTTGAGTTAAAGTATTGTAAGAATCTCACATCT 2643
Query 2656 CTTCCCATACTTCCACCAAATCTTCAGTGCTTAAATGCACATGGTTGTACTTCACTAAGA 2715
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2644 CTTCCCATACTTCCACCAAATCTTCAGTGCTTAAATGCACATGGCTGTACTTCACTAAGA 2703
Query 2716 ACAGTCGCCAGTCCGCAAACCCTTCCTACACCAACAGAGCAGATTCATTCCACCTTTATT 2775
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2704 ACAGTCGCCAGCCCGCAAACCCTTCCTACACCAACAGAGCAGATTCATTCCACCTTTATT 2763
Query 2776 TTCACTAACTGTTACGAACTAGAACAAGTCTCAAAGAATGCTATCATTTCTTACGTTCAG 2835
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2764 TTCACTAACTGTCACGAACTAGAACAAGTCTCAAAGAATGCTATCATTTCTTACGTTCAG 2823
Query 2836 aaaaaaaGCAAGTTGATGTCAGCTGATCGATATAATCAGGATTTTGTCTT-CAAATCCTT 2894
||||||||||| |||||||||||||||||||||| || ||||||||| || |||||||||
Sbjct 2824 AAAAAAAGCAAATTGATGTCAGCTGATCGATATAGTCCGGATTTTGT-TTACAAATCCTT 2882
Query 2895 GATTGGTACTTGCTTTCCGGGATATGACATACCTGCATGGTTTAACCACCAAGCACTGGG 2954
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 2883 GATTGGTACTTGCTTTCCGGGATGTGAGATACCTGCATGGTTTAATCACCAAGCACTGGG 2942
Query 2955 ATCAGTCTTGA-CGCTGAAACTTCCTCAA-CATTGGAATGCAGGTAG-ATTAATCGGGAT 3011
||||||||| | | ||| ||||||||||| | ||||||| || |||| || |||||||||
Sbjct 2943 ATCAGTCTTAATC-CTGGAACTTCCTCAAGC-TTGGAATTCAAGTAGGAT-AATCGGGAT 2999
Query 3012 TGCTCTATGTGTTGTAGTCTCGTTTAATGG-GTACAAAGACCAAAGCAACAGTCTCCAAG 3070
|||||||||||||||||||||||||| || ||| | |||||||| || |||||||||||
Sbjct 3000 AGCTCTATGTGTTGTAGTCTCGTTTAA-GGAGTATAGAGACCAAAACAGCAGTCTCCAAG 3058
Query 3071 TGAAGTGCACCTGTGAGTTTACTAATGTATCCTTGAGCCCGGAAAGTTTCATTGTTGGAG 3130
|| ||||||| ||||||||||| |||||||||||||||| |||||| ||||| ||||| |
Sbjct 3059 TGCAGTGCACGTGTGAGTTTACGAATGTATCCTTGAGCCAGGAAAGCTTCATGGTTGGTG 3118
Query 3131 GTTTTTCCGAACCAGGCGATGAGACACATACGTTTGAGGCAGACCATATCTTCATTTGCT 3190
| | || |||| ||||||||||||||||||| ||||| |||||||||| |||||| |||
Sbjct 3119 GCTGGTCTGAACAAGGCGATGAGACACATACGGTTGAGTCAGACCATATTTTCATTGGCT 3178
Query 3191 ACACCACTTTGCTTAATATCAAGAAACATCAACAGTTTCCATCAGCTACTGAAGTTTCCC 3250
||||||||||||||||||| ||||| | |||||||||||||| |||||||||| ||||||
Sbjct 3179 ACACCACTTTGCTTAATATAAAGAACCGTCAACAGTTTCCATTAGCTACTGAAATTTCCC 3238
Query 3251 TTGGATTTCAAGTGACAAATGGTACAAGCGAGGTTGCAAAATGCAAGGTGATGAAGTGTG 3310
|| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 3239 TTCGATTTCAAGTGACAAATGGTACAAGCGAGGTCGAAAAATGCAAGGTGATAAAGTGTG 3298
Query 3311 GCTTCTCTTTGGTGTATGAGCCTGATGAAGTTGAGAACTCATCTTGGAAGGTGACTCCAA 3370
||||||||||||||||||||||| |||||| ||| | | |||||||||||| |||||||
Sbjct 3299 GCTTCTCTTTGGTGTATGAGCCTAATGAAGCTGATAGCACATCTTGGAAGGAAACTCCAA 3358
Query 3371 GGATAGAGGACAAGAGACAAGGTCGAAGAAGCTCTTTTAGAACTGCAGAAGAGGATGATG 3430
|||| ||||| || ||||||| || |||| |||||||| ||||| ||||| | |||||
Sbjct 3359 GGATGGAGGATAATAGACAAGACCGGAGAATCTCTTTTAAAACTGGAGAAG-G--TGATG 3415
Query 3431 ATTGCCCCATTGCAACTCCAACAACAGC 3458
| ||||||||||||||||||||||||||
Sbjct 3416 ACTGCCCCATTGCAACTCCAACAACAGC 3443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174580961640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5