BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915611
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45210.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 870 0.0
> AT5G45210.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18295521-18298434 FORWARD LENGTH=2094
Length=2094
Score = 870 bits (471), Expect = 0.0
Identities = 1051/1320 (80%), Gaps = 84/1320 (6%)
Strand=Plus/Plus
Query 802 GAGAA-AAGAGTTCTTGTTGTTCTTGATGATGTGCGCAATCC-AATGGA-TGCTGAGTCT 858
||||| || ||||||| |||||||||||||||||||||| || ||||| | | ||||||
Sbjct 796 GAGAAGAA-AGTTCTTTTTGTTCTTGATGATGTGCGCAA-CCTGATGGATTTC-GAGTCT 852
Query 859 TTCCTAGGAGGATTTGATCATTGTTTTGGTCCC-GAAAGTTTAATGATCATATCATCCCG 917
||||| |||||| |||| | | || | ||| | |||| |||| ||| || ||||| |
Sbjct 853 TTCCTTGGAGGAATTGA--A-GGGGTTAG-CCCTGGAAGTGTAATAATCCTAACATCCAG 908
Query 918 AGATAAACAAGTTCTTCATCAGTGTCAGGTTGATAG-TGT-TTACG-AGATACCG-GCTT 973
|||||||||||||||||||||||| ||||| || | ||| || || || | ||| | |
Sbjct 909 AGATAAACAAGTTCTTCATCAGTGCCAGGTCGA-GGATGTATT-CGAAG-TTCCGAG-TC 964
Query 974 TAAAC-AAGAAGGAGGCTCAACGGTTATTCACCCGGTTTGCATTTTCAGAAA-AAGAACC 1031
| ||| | ||| || ||| |||||||||| ||||| || || || ||| ||| ||
Sbjct 965 TGAACGAGGAA-GAAGCTGTACGGTTATTCGCCCGGACCGC-GTTCCATAAAGAAGGGCC 1022
Query 1032 AAGTGATACT-AATCTTATAGAAGTGTCAAAGAAGGTCG-TTGAGTATGCTGATGGAAAT 1089
||||||| || ||| | || || || ||||||||||| | | || ||||||| |||||||
Sbjct 1023 AAGTGATGCTAAAT-TAATGGACGTATCAAAGAAGGTTGCTAGA-TATGCTGGTGGAAAT 1080
Query 1090 CCTTTA-GCTCTCTGTC-ACTATGGCAGAGAGCTGG-G--GAAGAAGAAACCGGAAGAAG 1144
|| | | ||||| || | |||||| |||||||||| | ||| ||||| |||||||||
Sbjct 1081 CC-TAAGGCTCTATG-CTTCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGAAA 1138
Query 1145 TGGTGGCGGAATTCGAGAAGATTAAGCAATCTCCTCCGCGGGAGATTA-TGCATGTGT-T 1202
||| || ||| || |||||||| | ||||| ||| || | || | || | || || | |
Sbjct 1139 TGGAGGAGGAGTTTGAGAAGATGAGGCAATGTCCCCCCCAAGA-AATACT-CA-GTTTAT 1195
Query 1203 TAAG-AGCAGCTATGATG-AGCTCAGCGAAAATGAGAGGAGCATATTCTTAGACATTGCT 1260
| || ||||||||||||| | || | ||| |||||||| || |||||||| ||||||||
Sbjct 1196 TCAGAAGCAGCTATGATGCA-CTTAACGACAATGAGAGAAGTATATTCTTGGACATTGCG 1254
Query 1261 TTTTTCTTTAACGGTGAAAACC-T-CGATTATGTCATGCGTATACTTGAAGGGTGTGGTT 1318
| ||||||||| |||| |||| | || |||| ||||| ||||||||||||||||| |
Sbjct 1255 TGTTTCTTTAATGGTG--AACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGGGT 1312
Query 1319 TCTTCCCACACGTTGGTATTGACCGTCTTG-TAGAACGGTCTTTATTGATGATATCAAA- 1376
|||| ||||||||||| ||||||||||||| | || |||||| || ||| ||| |||||
Sbjct 1313 TCTTTCCACACGTTGGGATTGACCGTCTTGCT-GAGCGGTCTCTACTGACGATCTCAAAG 1371
Query 1377 GAACAACAA-TGTTGAGATGCAA-ATTTTGATTCAGGATATTGCTCG-GAATATCGTCAA 1433
||| || || || ||||||||| |||| ||||| ||| ||| || |||| || ||||
Sbjct 1372 GAA-AA-AAGAGTGGAGATGCAAGGTTTT-ATTCAAGATGCTGCCCGTGAAT-TCATCAA 1427
Query 1434 TGAAGaaaaaaaTCAAATCACAAGGCATCGCAGATTGTGGGATCCTTCAATCATTAAATC 1493
|| | | | | |||| ||||||| ||||| || |||| || | ||
Sbjct 1428 -CCAG------A-C---T-TCGAGGCGTCGCAGACACTGGGAACCATCAAGAATCAGATT 1475
Query 1494 ATTTCTAGAAGAA-AATAAACCTAAGGGGACTGAAGTTATTGAAGGAATTTTTCTAGACA 1552
||| |||||| || ||||| ||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1476 ATTACTAGAA-AATGATAAATCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGACA 1534
Query 1553 CAACAAAATTAACCGTTGATGTTAATCCTAAGGCCTTTGAGAATATGTATAATCTTAGAC 1612
|||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1535 CAACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGAC 1594
Query 1613 TATTGAAGATCTACAGTTCAAACTCTGAAAGTACTCAAGAA-TTCCATCTTCCCAAGGGA 1671
| ||||||||||| ||| || |||| |||| | |||||||| || | |||| | |||| |
Sbjct 1595 TGTTGAAGATCTATAGTACACACTCCGAAACTGCTCAAGAACTT-CGTCTTACTAAGGAA 1653
Query 1672 CTCCGCTCTTTGCCTTATGAGCTCAGGCTACTTCATTGGGAAAAGTATCCGTTGCGATCG 1731
|| ||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct 1654 CTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAATCG 1713
Query 1732 TTTCCTGAAGACTTTGATC-CTAGACACCTTGTTGAACTCAATATGCCTTATAGTCATCT 1790
|| ||| |||| ||||| | || | |||||||||||||||||||||||||||||||| ||
Sbjct 1714 TTGCCTCAAGATTTTGA-CACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCAGCT 1772
Query 1791 TCAGAA-TCTCTGGGAAGGAACCAAGAGTTTGGTGAAGTTGAAGATAATAAATCTTAGCC 1849
||| || |||||| | ||||| ||||| | | || || ||||| |||||||||||||
Sbjct 1773 TCA-AAGTCTCTGTGTTGGAACTAAGAGCCTAGCCAAATTAAAGATGATAAATCTTAGCC 1831
Query 1850 ATTCTCAGCAACTAGTTGAAGTTGATGTACTTTTGAAAGCTTGTAGTCTTGAGCAAATCC 1909
| |||||| ||||| |||||||||| | ||| |||||| |||| ||||||| ||||
Sbjct 1832 ACTCTCAGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAATAG 1891
Query 1910 ATCTTCAAGGTTGCACAAGCTTGGAGAGCATCCCACACATTGATCAGCTAGAGAATCTTC 1969
||||||||||||| ||||||||| ||||||||||||||| |||| |||| |||||||||
Sbjct 1892 ATCTTCAAGGTTGTACAAGCTTGAAGAGCATCCCACACACGGATCGGCTAAAGAATCTTC 1951
Query 1970 AACTTCTGAATCTTTCTGGTTGCACGAG-ACTCAAACGTAAAGAGATTCTAGAGGAA-AT 2027
|| |||||||||| |||||||||||||| | ||||||||| ||| | || || || ||
Sbjct 1952 AATTTCTGAATCTATCTGGTTGCACGAGTA-TCAAACGTACGGAGGCTATAAAG-AAGAT 2009
Query 2028 aaaaa-aaCTTGA-TCCAGAAGGCGGGTTAAGAGAAACAAAATTTGAATCATTGGTGTTC 2085
|||| || | || || ||||||| | ||||||||||| | |||||||||| ||||||||
Sbjct 2010 AAAAGGAA-T-GAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGTTC 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105923149950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5