BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915616

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45220.1 | Symbols:  | Disease resistance protein (TIR-NBS-L...   296    2e-79


> AT5G45220.1 | Symbols:  | Disease resistance protein (TIR-NBS-LRR 
class) family | chr5:18298926-18301069 REVERSE LENGTH=1641
Length=1641

 Score =  296 bits (160),  Expect = 2e-79
 Identities = 206/228 (90%), Gaps = 3/228 (1%)
 Strand=Plus/Plus

Query  22    AGAACTTTCACCAAGTCGCGAATGCACGGTGAAGTTAAGCCACCGAGAAATATCCAAGTT  81
             |||||||||||  |  |||||||| ||||| |||| ||||||||  ||||| | ||||||
Sbjct  943   AGAACTTTCACTGACACGCGAATGGACGGTAAAGTCAAGCCACC--GAAAT-TTCAAGTT  999

Query  82    TTCATCAATTTCCGCGGAGATCAGTTGCACTACAATTTCGTCAGCTATCTTGTGGATGCA  141
             |||||||||||||||||||||||||||| | ||||||||||| ||||||| || ||||||
Sbjct  1000  TTCATCAATTTCCGCGGAGATCAGTTGCGCAACAATTTCGTCGGCTATCTCGTTGATGCA  1059

Query  142   CTTCGGAGAAGTGAGATCAACGTGTTCATAGACAATGAGGAGCAAAGAGGTGAAGACCTC  201
             ||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct  1060  CTTCGAAGAAGTGAGATCAACGTTTTCATAGATAATCAGGAGCAAAGAGGTGAAGACCTC  1119

Query  202   AACACTCTTTTCAAGAGGATCGAAGAATCTGGGATTGCCATAGTTGTG  249
             |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  1120  AACACTCTTTTCAAGAGGATCGAAGATTCTGGTATTGCCATAGTTGTG  1167


 Score =  268 bits (145),  Expect = 3e-71
 Identities = 171/184 (93%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  309   CAAGGTGCTTCCTATCTTCTACAAGGTGACTCCAACCAATGTGAAAAGACTTAAGGGAGA  368
             |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct  1248  CAAGGTGCTTCCCATCTTCTATAAGGTGACTCCAACCAATGTGAAAAGACCTAAGGGAGA  1307

Query  369   GTTTGGTGACCATTTCAGAGATAAGGAATACATGTACAAGTCTGACGAACCTATGATAAA  428
             |||||||||||||||||||||||| || ||||||||| ||||||| || |||||||||||
Sbjct  1308  GTTTGGTGACCATTTCAGAGATAAAGAGTACATGTACGAGTCTGATGAGCCTATGATAAA  1367

Query  429   GCAATGGAAAGAGGCGATCGTGTCTGTCTCCCATAAGTTTGCCCTGGCTTTGGATGAAAA  488
             || |||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||
Sbjct  1368  GCGATGGAAAGAGGCGATCGTGTTTATCTCCCATAGGTTTGCCCTGACTTTGGATGAAAA  1427

Query  489   AAGT  492
             ||||
Sbjct  1428  AAGT  1431


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 102/109 (94%), Gaps = 0/109 (0%)
 Strand=Plus/Plus

Query  498   ATTGGAGATTGATTTCGTTGAAACTATCGTCAAGGAGGTCTTGAAAATGCTACAAGCCAT  557
             ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1533  ATTGGAGATTGATTTTGTTGAAACTATCGTCAAGGAGGTCTTGAAAATTCTACAAGCCAT  1592

Query  558   ATGCAAAGTGGAAAGCGGGCAATCCTCTTTTTGTATGGAGAAAGCCTGA  606
             |||||||||||||||  | |||||||||||||||  |||||||||||||
Sbjct  1593  ATGCAAAGTGGAAAGTAGCCAATCCTCTTTTTGTGCGGAGAAAGCCTGA  1641



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29186039407


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5