BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915619

Length=1380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistanc...   115    1e-24
  AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resista...   111    1e-23


> AT5G45260.1 | Symbols: RRS1, ATWRKY52, SLH1 | Disease resistance 
protein (TIR-NBS-LRR class) | chr5:18326203-18332609 FORWARD 
LENGTH=4321
Length=4321

 Score =  115 bits (62),  Expect = 1e-24
 Identities = 213/284 (75%), Gaps = 17/284 (6%)
 Strand=Plus/Plus

Query  429  TGTGGAAAAGATCGCGAGAGATCTTTACGAGAAGCTC-TTTCCGAATGAACGAATTGGTA  487
            ||| ||| |||| | ||||||| | ||||||| || | |||  |  || ||||||||| |
Sbjct  476  TGTAGAAGAGATTGTGAGAGATGTGTACGAGACGCACTTTTATG-TTGGACGAATTGGAA  534

Query  488  TCTACTCAAGGATGCTGCCGGATATAGAAAAC-TTGATACAAAAGCAACAG-TGGGGAGT  545
            |||| ||   || ||||| ||| || |||||| | | || | ||||||| | | || | |
Sbjct  535  TCTATTC---GAAGCTGCTGGAGATTGAAAACATGGTTA-ACAAGCAACCGATAGGCA-T  589

Query  546  CAGAAGCATAGGGATTTGGGGTATGCCAGGCATAGGCAAGACTAA-GCTTGCTAAAGCAG  604
            | |  |  | || |||||||||||||| |||||||| ||||| ||  |||||||||||||
Sbjct  590  CCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGAAAGAC-AACACTTGCTAAAGCAG  648

Query  605  TCTTTGACCAAATGTCTTGTGACTACGAAG-TTACTTGCTTCCTACAAA-ACTTTCATGA  662
            ||||||||||||||||| | | ||  || | || |||| ||  | | || ||| | |  |
Sbjct  649  TCTTTGACCAAATGTCTAGCGCCTTTGATGCTT-CTTGTTTTAT-CGAAGACTATGAC-A  705

Query  663  AACCA-TTCATAAGAAGGGACTTAACGGTTTGCTGCAGGAACAA  705
            || || ||||| ||||||| ||| |  |||||||| ||||||||
Sbjct  706  AATCAATTCATGAGAAGGGTCTTTATTGTTTGCTGGAGGAACAA  749


> AT5G45050.1 | Symbols: TTR1, ATWRKY16, WRKY16 | Disease resistance 
protein (TIR-NBS-LRR class) | chr5:18176914-18181805 REVERSE 
LENGTH=4221
Length=4221

 Score =  111 bits (60),  Expect = 1e-23
 Identities = 149/189 (79%), Gaps = 17/189 (9%)
 Strand=Plus/Plus

Query  445  AGAGATCTTTACGAGAAGCTCTTTCCGA-AT-GAACGAATTGGTATCTACTCAAGGATGC  502
            |||||| | || ||||||||||||   | || ||||||||||| || || ||   || ||
Sbjct  391  AGAGATGTGTATGAGAAGCTCTTT--TATATGGAACGAATTGGAATATATTC---GAAGC  445

Query  503  TGCCGGATA-T-AGAAAACTTGA-TACAAAAGCAACAG-TGGGGAGTCAGAAGCATAGGG  558
            ||| ||| | | ||||||  ||| || | ||||||| | |||  | || |  |  | || 
Sbjct  446  TGCTGGAGATTGAGAAAA--TGATTA-ACAAGCAACCGTTGGACA-TCCGTTGTGTTGGA  501

Query  559  ATTTGGGGTATGCCAGGCATAGGCAAGACTA-AGCTTGCTAAAGCAGTCTTTGACCAAAT  617
            |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct  502  ATTTGGGGTATGCCTGGCATAGGCAAGACTACA-CTTGCTAAAGCAGTCTTTGACCAAAT  560

Query  618  GTCTTGTGA  626
            |||| ||||
Sbjct  561  GTCTGGTGA  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67971537930


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5