BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915640
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3... 219 2e-56
> AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624750-8631327
FORWARD LENGTH=4824
Length=4824
Score = 219 bits (118), Expect = 2e-56
Identities = 191/224 (85%), Gaps = 13/224 (6%)
Strand=Plus/Plus
Query 1 ATGACTGAATTGGACA-ACGATGTGGTTGCTCTAATGAGTAAGCGAGTGCTTGAAATTGC 59
||||||||||| || | |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 866 ATGACTGAATTAGA-AGACGATGTGGTTGCTCTAATGAGTAAGCGAGTGTTTGATATTGC 924
Query 60 TGGCTGTTTGGGAAAGAC----A--GTTGACCTGAATGGAAAACAAGTACCAATTAAGTC 113
||| |||||||| ||| | | ||||| |||||||| |||||| ||||| | |||||
Sbjct 925 TGGATGTTTGGGGAAGTCTGTCAAAGTTGAGCTGAATGGGAAACAAATACCAGTGAAGTC 984
Query 114 ATTCAGTGATTATGTTGATCTCTACTTAAGTGTC-GCCAATAAATCAAGGACTGAG---C 169
||||| |||||||||||| || ||| |||||| | || |||||||| ||||| ||| |
Sbjct 985 ATTCACTGATTATGTTGACCTATACCTAAGTG-CAGCTAATAAATCGAGGACGGAGGATC 1043
Query 170 CTCTCCCAAGGATGACTGAGAAAGTTAATGGTAGATGGGAGGTT 213
||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1044 CTCTCCCAAGGTTGACTGAGAAAGTTAATGATAGATGGGAGGTT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5