BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915653
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6 |... 676 0.0
> AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6
| chr5:18191575-18193207 REVERSE LENGTH=1179
Length=1179
Score = 676 bits (366), Expect = 0.0
Identities = 601/713 (84%), Gaps = 22/713 (3%)
Strand=Plus/Plus
Query 1 ATGGCTACTTCTTCTTTGGCTGTGAAACCAACCCCAACGGGACCTCAAGTGTTCATATGC 60
|||||| ||||||| | || ||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60
Query 61 TTCCGGGGGGCAGGTGTCCGTAAACACTTCATAAGCTTTCTTGACCCTGCCTTGAGAAAA 120
|||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct 61 TTCCGGGGAGCAGATGTCCGCAAACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGAA 120
Query 121 GCGAATATAAACGTCTTCATAGATGAGGACGAGTATTTGGGCTCAGATTTGGTTAACTTA 180
||||| ||||||||||||||||||||| |||||| |||||||||||| ||| |||| ||
Sbjct 121 GCGAACATAAACGTCTTCATAGATGAGAACGAGTTTTTGGGCTCAGAAATGGCTAACCTA 180
Query 181 TTGAAGAGGATAGAAGAGTCGGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAAGT 240
|||| |||||| |||||||| ||| ||||||||||||| ||||| | ||||||||||||
Sbjct 181 TTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAAGA 240
Query 241 TCGTATTGGTGCTTGGAGGAGCTGGCAAAGATCAAGGAATGCAAGGATCAAGGCCGTCTC 300
||| || |||||||| | |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 241 TCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTCTC 300
Query 301 AAAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCG-TCGTGAAATATCT-GAAAGGAA 358
| ||||||||||||||||||||||||||||||||||| | || |||| ||| ||| ||||
Sbjct 301 ATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCT-GTAAAATTTCTTGAA-GGAA 358
Query 359 AGTTTGGCGATCATTTCAGGGATCAA-ATACGCAATCTTAGACACCA-GCCAGAAAGAAC 416
| ||||||||| ||||||||| || | ||||||| | ||||| | || | || |||
Sbjct 359 AATTTGGCGATAATTTCAGGGCTCTGGA-ACGCAATAATCGACAC-ATGCTACCAATAAC 416
Query 417 TCAGAAATGGGAGGACGCTTTATTGTCTATTCCTGAATCAATAGGCATGCCTTTAGCAGC 476
|||||||||| |||| || ||| |||||| || | ||||||||||||||| || || |
Sbjct 417 TCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGA 476
Query 477 CCAAAG-GA-----CCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAGAGA-T 529
||||| || ||||||| |||||||||| ||||||||||||||||||||| | | |
Sbjct 477 ACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCA-ACAAT 535
Query 530 TGGTGGAGCATATGGCCGTCA-AAGGAAACCAA-GAAACAGAAGCG-AATCTTCCAGGAG 586
| ||||| ||||||| || | ||| |||| || |||| ||||||| || | | | ||
Sbjct 536 TACTGGAGAATATGGCTGTGAGAAG-AAAC-AATGAAATAGAAGCGCAA-CGTAAATTAG 592
Query 587 GTTCCATCGTCCCAGCAATGAAACCAAAAAGAGAAGCGAATAGTCAAGGAGGTTCCATGG 646
|||||||||||| ||| |||||| ||| ||||||||||| |||||||||||||||||
Sbjct 593 TTTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGG 652
Query 647 TCCTTGCAATGAAGCCAGAAACAGAAGCGAGTCATCAAGGAGGTTTCGTGGTC 699
||| ||||| ||||||||||| |||||||||||| ||||| ||| |||||||
Sbjct 653 TCCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTC 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5