BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915655
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6 |... 1513 0.0
> AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6
| chr5:18191575-18193207 REVERSE LENGTH=1179
Length=1179
Score = 1513 bits (819), Expect = 0.0
Identities = 1069/1188 (90%), Gaps = 24/1188 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAAGTGTTCATATGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60
Query 61 TTCCGGGGAGCAGATGTCCG-ATCACACTTCATAAGCTATCTTGACCCTGCTTTGAGAGA 119
|||||||||||||||||||| | |||||||||||||| ||||| |||||| ||||||||
Sbjct 61 TTCCGGGGAGCAGATGTCCGCA-AACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGA 119
Query 120 AGCGAATATAAACGTCTTCATAGATGATG-ACGAGCTTTTGGGCTCAGATTTGGTTCACC 178
|||||| |||||||||||||||||||| | ||||| ||||||||||||| ||| | |||
Sbjct 120 AGCGAACATAAACGTCTTCATAGATGA-GAACGAGTTTTTGGGCTCAGAAATGGCTAACC 178
Query 179 TATTGAAGAGGATAGAAGAGTCGGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAA 238
|||||| |||||| |||||||| ||| ||||||||||||| ||||| | |||||||||||
Sbjct 179 TATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAA 238
Query 239 GTTCGTATTGGTGCTTGGAGGAGCTGGCAAAGATCAAGGAATGCAAGGATCAAGGCCGTC 298
| ||| || |||||||| | |||||||| |||||||||||| ||||||||||||||||||
Sbjct 239 GATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTC 298
Query 299 TCAAAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGTC-GTGAAATATC-TGAAAGG 356
||| ||||||||||||||||||||||||||||||||||| | || |||| || || ||||
Sbjct 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCG-CTGTAAAATTTCTTG-AAGG 356
Query 357 AAAGTTTGGCGATCATTTCAGGGATC-AAATACGCAATCTTAGACACCA-GCCAGAAAGA 414
||| ||||||||| ||||||||| || | ||||||| | |||| || || | || |
Sbjct 357 AAAATTTGGCGATAATTTCAGGGCTCTGGA-ACGCAATAATCGACA-CATGCTACCAATA 414
Query 415 ACTCAGAAATGGGAGGACGCTTTATTGTCTATTCCTGAATCAATAGGCATGCCTTTAGCA 474
|||||||||||| |||| || ||| |||||| || | ||||||||||||||| || ||
Sbjct 415 ACTCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCT 474
Query 475 GCCCAAAGTGAGAAGACCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAAAAA 534
| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||
Sbjct 475 GAACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAA 534
Query 535 TCACTGGATTATATGGCTGTGAGAAG-----A-GAAATAGAAGCG-AATCGTCAAGGAGT 587
| |||||| |||||||||||||||| | |||||||||||| || ||| || |||
Sbjct 535 TTACTGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAA-CGTAAATTAGT 593
Query 588 TTCCATCATCCCTGCAAGGAAACCAAAAGCAGAAGCGAATCCTCAAGGAGGTTCCATGGT 647
||||||| ||||| ||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 594 TTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGT 653
Query 648 CCCTGCAAGGGAGCAAGAAAGAGAAGCGAGTCATCAAGGAGGTTCCCTGGTCCCGTCCAT 707
|||||||||| ||| |||||||||||||||||| ||||| ||||| ||||||| |||||
Sbjct 654 CCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCAT 713
Query 708 GGTCCTTGCAAAGGATTTAGTA-ATCACTCATTTTGATAAACCTCAAGTATGGACTTGGA 766
||||| ||||| |||||||| | ||||| |||| ||| ||||||||| |||||||||||
Sbjct 714 GGTCCCTGCAAGGGATTTAG-ACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGA 772
Query 767 GTACTATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTCGAATAAACTTT 826
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 773 GTACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTT 832
Query 827 ACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAACTAAGTACG 886
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 833 ACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACG 892
Query 887 AGGCTGTATTCGTAGTGAAATTAGAAAATAATGCTAGTGGATGGGAG-ATACCAGTGACT 945
|||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
Sbjct 893 AGGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCA-ACCAGTGAAT 951
Query 946 CTAAAGCTGAAGGTGGTACAACACGATGGGGACGATGATCGGGTGGATCGAACAGAGAAC 1005
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 CTAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAAC 1011
Query 1006 TTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCG 1071
Query 1066 CCAAAAACCACTCCCGCAACGATCATTTGCACCATGTATCAGTACGCGGACGAGTATAAG 1125
|||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1072 CCAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAG 1131
Query 1126 AAAAAGGGACTCGTCGTCAAAGGTCTTGCAATACGTCCCACGAACTAA 1173
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1132 AAAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5