BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915660
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32140.1 | Symbols: | transmembrane receptors | chr2:136556... 521 4e-147
AT1G65390.1 | Symbols: ATPP2-A5, PP2-A5 | phloem protein 2 A5 |... 302 6e-81
> AT2G32140.1 | Symbols: | transmembrane receptors | chr2:13655627-13657175
REVERSE LENGTH=1291
Length=1291
Score = 521 bits (282), Expect = 4e-147
Identities = 461/547 (84%), Gaps = 14/547 (3%)
Strand=Plus/Plus
Query 23 cttcttcttcttcctcttcttcCAATGTATCATTGATTTCAACGAGACCTCAAGTATTCA 82
|||||||| |||| |||||||| ||||||||| |||| ||||| |||||||||| ||||
Sbjct 156 CTTCTTCTCCTTCTTCTTCTTCTAATGTATCAGTGATCCCAACGGGACCTCAAGTGTTCA 215
Query 83 TCAATTTCCGAGGAAAAGAGCTACGCAAAGGCTTCATCAGCTTTCTTGTGCCTGCCTTGA 142
||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 216 TCAGTTTTAGGGGAAAAGAGCTACGCAAAGGCTTCATCAGTTTTCTTGTGCCTGCCTTG- 274
Query 143 AAG-ACAATAACATCAACGTGTTTATAGACGATCAAGAGGAGAGGGGCAAATATCTAACT 201
||| | || ||||||||||| |||||||| || || |||| |||||| ||| | |||| |
Sbjct 275 AAGAAAAAAAACATCAACGTCTTTATAGATGAGCACGAGGTGAGGGGAAAAGACCTAA-T 333
Query 202 -AGCCTGTTTGA-TAGGATGGGTGAGTCGAAAATAGCGTTGGTTATCTTCTCGGA-AGAT 258
||||||||| | ||||| |||||||| ||||| |||||||| |||||||| || ||
Sbjct 334 CAGCCTGTTT-AGGAGGATAGGTGAGTCAAAAATCGCGTTGGTAATCTTCTCTGAGGGA- 391
Query 259 TACACCGAGTCAAAATGGTGTTTGGATGAGCTGGTACAGATCAAAG-AATGTATGGATCA 317
|||||||||||||||||||||||||| ||||||||||||||| ||| |||| | |||||
Sbjct 392 TACACCGAGTCAAAATGGTGTTTGGACGAGCTGGTACAGATC-AAGAAATGCGTTGATCA 450
Query 318 AAACAAACTTC-GAGTGATTCCCATCTTCTACAAGCTTGATCCCGCGGTGGTGAAACGTC 376
||| ||| || || |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 451 AAAGAAA-ATCATAGCGATTCCCATCTTCTACAAGCTTGATCCCGCAGTGGTGAAGGGTC 509
Query 377 TTCAAGGAAAATTTGGCGATCAATTCAGGGATCTGGAAT-ATAGATATAAACATAAACCA 435
|| |||||||||| |||||| |||||||||||||| | | | |||||| | ||| |||||
Sbjct 510 TTAAAGGAAAATTCGGCGATAAATTCAGGGATCTG-ATTGAGAGATATCATCATGAACCA 568
Query 436 GAAAGACCCCAAAAATGGAAGGAAGCTGTGATTTCTGTTTGCCAAACGTTTGCCTTGTTC 495
|||||| ||| ||||||| ||||||| ||| |||||||| || ||||||||| |||| |
Sbjct 569 GAAAGATACCAGAAATGGACGGAAGCTTTGACTTCTGTTTCCCGAACGTTTGCATTGTGC 628
Query 496 TTGCCCGAACACAGTGACACATCCGATAAAGATTTCATAATGTTAATCGTCAAGGAGGTT 555
|| || ||||||||||| | ||| || || |||||||||| || |||| ||||||| |||
Sbjct 629 TTACCAGAACACAGTGATAAATCTGAGAAGGATTTCATAAGGTCAATCATCAAGGAAGTT 688
Query 556 GGGAAAG 562
|||||
Sbjct 689 AAGAAAG 695
> AT1G65390.1 | Symbols: ATPP2-A5, PP2-A5 | phloem protein 2 A5
| chr1:24292478-24294631 FORWARD LENGTH=1389
Length=1389
Score = 302 bits (163), Expect = 6e-81
Identities = 313/383 (82%), Gaps = 19/383 (5%)
Strand=Plus/Plus
Query 775 GAATCAGCCG-TGGAAATTGCGTATTTGAGAAA-AGCAAGCTGGCTAGACGTAGAAGGAA 832
||||||| | |||||||||| | ||||| ||| || |||||||||||||||| ||||
Sbjct 953 GAATCAG-TGATGGAAATTGCATTTTTGA-AAAGTGCTAGCTGGCTAGACGTAGCTGGAA 1010
Query 833 AGTTTGACACACGATATCTGTCCCCGAGTACAAGGTACGAGGTAGTGTTAGTGGTGTTGT 892
|||||||||| |||||| || ||||||| |||||||||||||| ||||| || ||| ||
Sbjct 1011 AGTTTGACACTCGATATTTGACCCCGAGGACAAGGTACGAGGTGGTGTTCGTAGTGAAGT 1070
Query 893 T-GCAATACACCAAATTCAAATGGAAGAAACCAGTGAAGCTGAAGCTGGACTTACTTTGT 951
| | |||||| | |||| ||||| ||| || ||||||||| ||||| ||||| | |
Sbjct 1071 TAG-AATACA-C--ATTCGAATGGGAGACACTAGTGAAGCTAAAGCTAGACTTGCCGAAT 1126
Query 952 AGTAT-AGAGCAACCGCAAG---AGTGTTGTATGAGCATGGCAGGTC-ACATAACTAATC 1006
| | | ||| ||||||||| || | ||| || ||| | | | |||||| | | |
Sbjct 1127 ACT-TGGGAGAAACCGCAAGAACAGAG-TGT-GGA-CAT-GTTTGACTACATAAGTGACC 1181
Query 1007 AATGGATTGATATTCCAGTTGGCGAGTTCACCACATCGGTGACAAACATCGGGGAAATCT 1066
||||| | |||||||||||||| ||||||||||||||| || |||| ||||||||||||
Sbjct 1182 AATGGCTCGATATTCCAGTTGGAGAGTTCACCACATCGAAGAAAAACGTCGGGGAAATCT 1241
Query 1067 CTTTTGCGATGTATGAACATGAGTGCCAACTGTGGAAGTCAGGGCTCTTTGTCAAAGGTG 1126
||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1242 CTTTTGCAATGTACGAACACGAGTGCCAACTGTGGAAGTCAGGCCTCTTCGTCAAAGGTG 1301
Query 1127 TTACAATTCGTCCCAAATACTAA 1149
|||||||||||||||||||||||
Sbjct 1302 TTACAATTCGTCCCAAATACTAA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5