BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915666
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45020.1 | Symbols: | Glutathione S-transferase family prot... 1563 0.0
AT4G19880.2 | Symbols: | Glutathione S-transferase family prot... 686 0.0
> AT5G45020.1 | Symbols: | Glutathione S-transferase family protein
| chr5:18168682-18170651 FORWARD LENGTH=1262
Length=1262
Score = 1563 bits (846), Expect = 0.0
Identities = 935/979 (96%), Gaps = 2/979 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 181
Query 61 ACATTCCGCAACTTTGTTTCACAAGATCCTCATTCTCAGTTTCTAGCTGAATCAGGAAGA 120
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 182 ACATTCCGCAACTTTGTTTCACAAGATCCTGATTCTCAGTTTCCAGCTGAATCAGGAAGA 241
Query 121 TACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAAG 301
Query 181 ATCAAAGGACTTGATGAAGCAATCAGCTTCTCGTCGGTTCATGCAATTTGGGGAAGAACC 240
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 302 ATCAAAGGACTTGATGAAGCAATCACCTTCTCGTCGGTTCATGCCATTTGGGGAAGAACC 361
Query 241 AAGGAAACTGATGATCATAGAGGATGGGTTTTCCCAGATTCGGATGCCGAGCTCCCTGGA 300
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 362 AAGGAAACTGATGATCATAGAGGATGGGTTTTCCCGGATTCGGATACCGAGCTCCCTGGA 421
Query 301 GCTGAGCCTGACTATCTTAATGGTGCCAAGAGTGTGAGAGAACTCTACGAGATTGCTAGC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 422 GCTGAGCCTGACTATCTTAATGGTGCCAAAAGTGTGAGAGAACTCTACGAGATTGCTAGC 481
Query 361 CCCAACTATGAGGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGACTGTA 420
|| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 482 CCAAACTATGAAGGGAAGTACACTGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTGTT 541
Query 421 GTTAACAATGAGAGTTCGGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTATTGCG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTTAACAATGAGAGTTCAGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTATTGCG 601
Query 481 AAAAACCCGTCACTCGACCTTTATCCTTCTCATCTCAGAGACACGATCGACGAGACTAAC 540
|||| ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 602 AAAACCCCGTCACTTGACCTTTATCCTTCTCATCTCAGAGACGTAATCAACGAGACTAAC 661
Query 541 GAATGGGTTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGTTTTGCTAGGAAACAA 600
| ||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 662 GGATGGGTTTTCAACGGAATAAACAACGGTGTTTATAAATGTGGGTTTGCAAGGAAACAA 721
Query 601 GAACCCTACAATGAGGCAGTGAACCAGTTATACGAAGCAGTAGATAGATGTGAGGAAATA 660
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 722 GAACCCTATAATGAGGCAGTGAACCAGTTATATGAAGCAGTAGATAGATGTGAGGAAGTA 781
Query 661 CTCAGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATATCCGATTATTC 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CTCGGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATATCCGATTATTC 841
Query 721 GCCACTCTCATAAGATTTGATGAGGTTTACT-CGGTTCACTTCAAATGCAACAAGAGACT 779
| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 842 GTCACTCTCATAAGATTTGATGAGGTTTA-TGCAGTTCACTTCAAATGCAACAAGAGACT 900
Query 780 CTTACGGGAATACCCGAATATCTTCAACTACATAAAAGATATCTACCAAATCCAGGGCAT 839
||||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 901 CTTACGGGAGTACCCGAATATCTTCAACTACATAAAAGACATTTACCAAATACACGGCAT 960
Query 840 GAGTAGCACTGTGAACATGGAACACATTAAGCAACATTACTACGGGAGCCACCCTACGAT 899
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 961 GAGTAGCACCGTAAACATGGAACACATTAAGCAACATTACTACGGAAGCCACCCTACGAT 1020
Query 900 AAACCCATTCGGGATCATCCCTCACGGCCCCAATATCGATTACTCTTCGCTTCATGACCG 959
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 1021 AAACCCATTCGGGATCATCCCTCACGGCCCCAATATCGACTACTCTTCGCCTCATGATCG 1080
Query 960 CGACAGATTCTCCTCGTGA 978
|||||||||||||||||||
Sbjct 1081 CGACAGATTCTCCTCGTGA 1099
> AT4G19880.2 | Symbols: | Glutathione S-transferase family protein
| chr4:10784391-10786423 REVERSE LENGTH=1496
Length=1496
Score = 686 bits (371), Expect = 0.0
Identities = 631/756 (83%), Gaps = 20/756 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCA 60
|||||| | |||| |||||||||||||||||| || ||||||||| |||||| |||||
Sbjct 141 ATGGCTCGATCTGCGGTTGATGAGACATCAGATTCAGGAGCTTTTCAAAGAACTGCATCG 200
Query 61 ACATTCCGCAACTTTGTTTCACAAGA-TCCTCATTCTCAGTTTCTAGCTGAATCAGGAAG 119
|||||||| ||||| |||||| |||| ||| |||||||||||| ||||||||| || ||
Sbjct 201 ACATTCCGTAACTTCGTTTCAAAAGATTCC-AATTCTCAGTTTCCAGCTGAATCTGGTAG 259
Query 120 ATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAA 179
|||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 260 ATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGCCTTTCATACTTAAA 319
Query 180 AATCAAAGGACTTGATGAAGCAATCAGCTTCTCGTCGGTTCATGCAATTTGGGGAAGAAC 239
|||||||||||||| || ||||| ||||||||||| || | | ||||||||||||||
Sbjct 320 GATCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCATTTGGGGAAGAAC 379
Query 240 CAAGGAAACTGATGATCATA-GAGGATGGGT-TTTCCCAGATTCGGATGCCG-AGCTCCC 296
||| ||||| ||||| |||| | |||||||| ||| |||| ||| ||| ||| || | ||
Sbjct 380 CAAAGAAACCGATGAACATATG-GGATGGGTCTTT-CCAGGTTCAGATACCGAAG-TTCC 436
Query 297 TGGAGCTGAGCCTGACTATCTTAATGGTGCCAAGAGTGTGAGAGAACTCTACGAGATTGC 356
|||||||| |||||| ||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 437 AGGAGCTGATCCTGACCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATTGC 496
Query 357 TAGCCCCAACTATGA-GGGGAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGA 415
|||||| ||||| | |||||||| ||||||||| ||||||||||||||||||| || |
Sbjct 497 TAGCCCAAACTA-CACCGGGAAGTATACTGTTCCTGTTCTGTGGGATAAGAAGCTCAAAA 555
Query 416 CTGTAGTTAACAATGAGAGTTCGGAGATAATCCGGATGTTCAACACTGAGTTCAATGGTA 475
|||| |||||||| |||||| | || |||||||||||||||||||||||||||||| ||
Sbjct 556 CTGTTGTTAACAACGAGAGTGCAGAAATAATCCGGATGTTCAACACTGAGTTCAATCATA 615
Query 476 TTGCGAAAAACCCGTCA-CTCGACCTTTATCCTTCTCATCTC-AGAGAC-ACGATCGACG 532
||||| ||| || | | || || ||||| ||||| |||||| | || | | ||||| |
Sbjct 616 TTGCGGGAAATCC-TGATCTTGATCTTTACCCTTCCCATCTCCA-AG-CTAAAATCGATG 672
Query 533 AGACTAACGAATGGGTTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGTTTTGCTA 592
| ||||| |||||| ||| ||| |||||||| |||||||| |||| ||| || ||||| |
Sbjct 673 AAACTAATGAATGGATTTACAATGGGATAAATAATGGTGTCTATAGATGCGGGTTTGCAA 732
Query 593 GGAAACAAGAACCCTACAATGAGGCAGTGAACCA-GT-TATACGAAGCAGTAGATAGATG 650
|||||||| ||| || | ||||||||| | || || ||| |||||| ||||||||||
Sbjct 733 AGAAACAAGGACCTTATGAGGAGGCAGTGGAGCAAGTGTAT--GAAGCATTAGATAGATG 790
Query 651 TGAGGAAATACTCAGAAAACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATAT 710
|||||| || || ||||||| || |||||||| || |||||||| |||||| |||||||
Sbjct 791 TGAGGAGATTCTTGGAAAACATCGGTACATCTGTGGTAACACTTTGACTGAAACAGATAT 850
Query 711 CCGATTATTCGCCACTCTCATAAGATTTGATGAGGT 746
| |||| || | ||| || ||||||||||| |||||
Sbjct 851 CAGATTGTTTGTCACCCTTATAAGATTTGACGAGGT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5