BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915672
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 488 2e-137
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 339 2e-92
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 324 6e-88
AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domain... 165 4e-40
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 488 bits (264), Expect = 2e-137
Identities = 407/474 (86%), Gaps = 18/474 (4%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTAT-TA 59
|||||||||||| ||||| | ||||||| |||| |||| |||||| |||||| |||| |
Sbjct 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTT-TTATGCA 422
Query 60 TTC-TTT-A-AGA-TATGGTTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCT 115
| | ||| | ||| | || ||||| ||| | ||||||||||||||||||||||||||||
Sbjct 423 TACTTTTGACAGAGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCT 481
Query 116 CTTTGAAGCTTTTCA-ATC-TAGAGTTAAAGAAACCAGAGTTTGTTGCTTCTCTACCTTG 173
||||||||| |||| | | ||||||||||||| |||| ||||||| ||||||||||||
Sbjct 482 CTTTGAAGC--TTCATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTG 539
Query 174 TCTCAAGATCATGCATCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTTTGGTTGTG 231
|||||||||| || | || || || | |||||| |||||||||||||||||||||||||
Sbjct 540 TCTCAAGATCTTGAAACT-GG-AGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTG 597
Query 232 GAGAAGCTCATCTCAGGATGTCCTGCTCTTGAATATCTTAAGCTGATTAGGCCTTTTGAT 291
||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||
Sbjct 598 GAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGAT 657
Query 292 ATTTCGAGTCAAAAAGTTCTGCTGTTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCCTT 351
||| || || |||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 658 ATTAGGACACATAAAGTTCTTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTT 717
Query 352 GGTTTATATTATGCGTTCAATAAGGGT-GATACAGATTTTTCAGTTGAGATTGATGCTCC 410
||| ||| |||| || |||||| | | ||||||||||||||||||||||||||||||
Sbjct 718 ACCTTACATTTTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGATTGATGCTCC 776
Query 411 ACGACTCAAGTATATGATTGTTAAAGAGAGTCAATCTGATAACATTGTGAGTAA 464
| ||||||||||||||| |||| || ||||||||||||||| ||||||| ||||
Sbjct 777 AAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTG-GTAA 829
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 339 bits (183), Expect = 2e-92
Identities = 298/351 (85%), Gaps = 17/351 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTAT-TA 59
|||||||||||| ||||||| |||||| ||||||||||||||||| |||||| ||| |
Sbjct 289 ATGGAGTTGATCGGTACAGTGGTTGATTGTGGAATTCAACATTTGTATGTTT-ATATGCA 347
Query 60 TTCTT-T-A-AGA-TATGGTTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCT 115
| ||| | | ||| | || |||||| ||| | ||||||||||||||||||||||||||||
Sbjct 348 TACTTGTAATAGAGT-TGATTTCATACGTCAAAACATTTACAAGAGCAAGACATTGGTCT 406
Query 116 CTTTGAAGCTTT-TCAATC-TAGAGTTAAAGAAACCAGAGTTTGTTGCTTCTCTACCTTG 173
|||||||||||| | || | ||||||| ||||| ||||| ||||||| ||||||||||||
Sbjct 407 CTTTGAAGCTTTAT-AA-CGTAGAGTTGAAGAATCCAGACTTTGTTGTTTCTCTACCTTG 464
Query 174 TCTCAAGATCATGCATCT-AGGCAGAGTTTGTCGCGGTGAGGATGGTCCTTTGGTTGTGG 232
|||||||||| || | || | | | | ||||| |||||||||||| |||||||||||||
Sbjct 465 TCTCAAGATCTTGAAACTGATGAAAA-TTTGTTACGGTGAGGATGGCCCTTTGGTTGTGG 523
Query 233 AGAAGCTCATCTCAGGATGTCCTGCTCTTGAATATCTTAAGCTGATTAGGCCTTTTGATA 292
|||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||
Sbjct 524 AGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAAGCCTTTTGATA 583
Query 293 TTTCGAGTCAAAAAGTTCTGCTGTTTCTGCGTGT-GA-GCTCTCA-GACTC 340
||| || ||| | ||| | |||||||||||| | || |||| || |||||
Sbjct 584 TTTTGACTCAGGACGTTATACTGTTTCTGCGTATTGATGCTC-CACGACTC 633
Score = 58.4 bits (31), Expect = 7e-08
Identities = 56/67 (84%), Gaps = 5/67 (7%)
Strand=Plus/Plus
Query 400 ATTGATGCTCCACGACTCAAGTATATGA--TTGTTAAAGAGAGTCAATCTGATAACATTG 457
|||||||||||||||||||||||||||| || ||| ||||||| || ||||| |||
Sbjct 616 ATTGATGCTCCACGACTCAAGTATATGACATT-TTAC-GAGAGTCGATTTGATAGGATTA 673
Query 458 TGAGTAA 464
|| ||||
Sbjct 674 TG-GTAA 679
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 324 bits (175), Expect = 6e-88
Identities = 261/300 (87%), Gaps = 15/300 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTAT-TA 59
|||||||||||| ||||| | |||||||||||||||||||||||| |||||| ||| |
Sbjct 295 ATGGAGTTGATCGGTACACTGGTTGATCGTGGAATTCAACATTTGTATGTTT-ATATGCA 353
Query 60 TTCTT-T-A-AGA-TATGGTTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCT 115
| ||| | | ||| | || |||||| ||| | |||||||||||||| |||||||||||||
Sbjct 354 TACTTGTAACAGAGT-TGATTTCATACGTCAAAACATTTACAAGAGTAAGACATTGGTCT 412
Query 116 CTTTGAAGCTTT-TCAATC-TAGAGTTAAAGAAACCAGAGTTTGTTGCTTCTCTACCTTG 173
|||||||||||| | || | ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 413 CTTTGAAGCTTTAT-AA-CGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTACCTTG 470
Query 174 TCTCAAGATCATGCATCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTTTGGTTGTG 231
|||||||||| || | || || || | ||| || ||||||||||||||||||||| |||
Sbjct 471 TCTCAAGATCTTGAAACT-GG-AGAATATTTTTCACGGTGAGGATGGTCCTTTGGTCGTG 528
Query 232 GAGAAGCTCATCTCAGGATGTCCTGCTCTTGAATATCTTAAGCTGATTAGGCCTTTTGAT 291
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 529 GAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGAT 588
> AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:18155837-18157340 FORWARD LENGTH=1170
Length=1170
Score = 165 bits (89), Expect = 4e-40
Identities = 157/189 (83%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 87 GAACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTTTCAAT-C-TAGAG-TTAAA 143
||||||||| ||||| ||||||||||| ||||| |||||| | || | ||||| || |
Sbjct 225 GAACATTTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGT--ATGCGTAGAGCTT-GA 281
Query 144 GAAACCAGAGTTTGTTGCTTCTCTACCTTGTCTCAAGATCATGCATCTAGGCAG-AGTTT 202
||| ||| ||||||||| |||||||||||||||||||||||||||||||| | | ||
Sbjct 282 GAATCCAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAAAATAATTG 341
Query 203 GTCGCGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTCCTGCTCTTG 262
|| |||| | |||| |||||||||||||||||| |||||| |||| |||| || |||||
Sbjct 342 GTA-CGGTTATGATGCTCCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTG 400
Query 263 AATATCTTA 271
|| ||||||
Sbjct 401 AAGATCTTA 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5