BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915673
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domain... 318 3e-86
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 230 1e-59
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 195 5e-49
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 172 3e-42
> AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:18155837-18157340 FORWARD LENGTH=1170
Length=1170
Score = 318 bits (172), Expect = 3e-86
Identities = 354/439 (81%), Gaps = 23/439 (5%)
Strand=Plus/Plus
Query 1 ATGCCTATGAACATGTT-TCAGAGCAAGACATTGGTGTCTATAAGGCTTGCAAATGTAGA 59
|||||||||||||| || | |||| ||||||||||||||| ||| ||||| | |||||
Sbjct 217 ATGCCTATGAACAT-TTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGTATGCGTAGA 275
Query 60 GCTTGAAAAT--AAAGATATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAT 117
|||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GCTTGAGAATCCAAAG-T-TTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAA 333
Query 118 AACATTTGTTACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCT 177
|| | ||| |||||| | |||| ||||||| |||||||||| |||||| | || |||| |
Sbjct 334 AATAATTGGTACGGTTATGATGCTCCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTT 393
Query 178 GTTCTTGAAGATCTTACCGTCGTAAGGATTTACT-ATGA-GG-A-T-CTAGAAACTATGC 232
|||||||||||||||||||| ||||||||| | | || | || | | | ||| || ||
Sbjct 394 GTTCTTGAAGATCTTACCGTGGTAAGGATTCA-TGAT-ATGGTAATACCAGAT-CT--GC 448
Query 233 CAGTTTTGCGTGTGAAATCTCAGACTCTGAAGGTCTTCCATTATA-TGTTTAAATGGG-G 290
| || | | |||||| |||| ||| |||||| |||| | || || ||||| | | || |
Sbjct 449 CTCTTCTACATGTGAAGTCTCTGACACTGAAGATCTTACGTT-TAGTGTTTGATTTGGAG 507
Query 291 A--ATGCCTACTACATATTTTTCGGTTGAGATTGATGCTCCGGAACTTA-AGTACATGAG 347
| ||| |||||| | | ||||||| |||||||||||||| |||| | |||| |||||
Sbjct 508 ATGATGACTACTATACCTATTTCGGTGGAGATTGATGCTCCAAAACT-AGAGTATATGAG 566
Query 348 GTTTAGAGATAGTCAATCTGATAAAATCTTGGTTAAGAACCTGAGTTCCTTGTTCAAGAT 407
|||| | |||| || ||||||| |||| |||| ||||| |||||||| ||||||||| |
Sbjct 567 TTTTATAAATAGGCACTCTGATACAATCATGGTAAAGAATCTGAGTTCATTGTTCAAGTT 626
Query 408 AGATCTTGACACTGAATTT 426
| ||||||| |||||||||
Sbjct 627 AAATCTTGATACTGAATTT 645
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 230 bits (124), Expect = 1e-59
Identities = 344/443 (78%), Gaps = 43/443 (10%)
Strand=Plus/Plus
Query 10 AACATGTTTC-AGAGCAAGACATTGGTGTCTAT-AAGGCTTGCA-AATGTAGAGCTTGAA 66
||||| || | |||||||||||||||| ||| | || |||| || || |||||| || ||
Sbjct 454 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-CATAACGTAGAG-TTAAA 509
Query 67 -AATAAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATTT 124
||| ||| | ||||||||||||||||||||||||||||| || | || || || ||||
Sbjct 510 GAATTCAGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTT 568
Query 125 GTTACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCTGTTCTTG 184
|| |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 569 GTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTG 628
Query 185 AAGATCTT-ACCGTCG-TAAGGA-TTT--ACTATGAGGAT-CTAGAAACTA-TGCCAGTT 237
|||||||| | | | | | ||| ||| | ||| |||| | | ||| | | | | |
Sbjct 629 AAGATCTTGAGC-T-GATTAGGCCTTTTGA-TATTAGGACAC-ATAAAGTTCTTCT-GCT 683
Query 238 T-TGCGTGTGAAATCTCAGACTCTGAAG-GTCTT--CCATTATATGTTTAA-ATGGGGAA 292
| ||||||||| |||||||||||||| | ||| || ||| || ||| || ||
Sbjct 684 TCTGCGTGTGAGCTCTCAGACTCTGAAAAG-CTTTACC-TTACAT-TTTGCGATCTATAA 740
Query 293 TGCCTAC-TACATATTTTTCGGTTGAGATTGATGCTCCG-GAACTTAAGTACATGAG-GT 349
| | | |||| ||||||| ||||||||||||||||| || || ||||| |||| ||
Sbjct 741 GGA-T-CGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGA-CTCAAGTATATGACTGT 797
Query 350 TTAGAGATAGTCAATCTGATAAAATCT-TGGTTAAGAACCTGAGTTCCTTGTTCAAG-AT 407
| | | | ||||||||||||| || | |||| |||||||||||||||||||||| | ||
Sbjct 798 TGA-ACAGAGTCAATCTGATAGCAT-TGTGGTAAAGAACCTGAGTTCCTTGTTCA-GCAT 854
Query 408 AGATC-TTGACACTGAATTTAAT 429
|| | ||| ||| ||||||||
Sbjct 855 CGA-CATTGGTACTAAATTTAAT 876
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 195 bits (105), Expect = 5e-49
Identities = 163/189 (86%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 10 AACATGTTTC-AGAGCAAGACATTGGTGTCTAT-AAGGCTTGCA-AATGTAGAGCTTGAA 66
||||| || | |||||||||||||||| ||| | || |||| | || |||||| |||||
Sbjct 379 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-TATAACGTAGAG-TTGAA 434
Query 67 -AATAAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAT-AACATT 123
||| ||| | ||||||||||||||||||||||||||||| || | || ||| || |||
Sbjct 435 GAATCCAGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACT-GATGAAAATT 492
Query 124 TGTTACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCTGTTCTT 183
||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct 493 TGTTACGGTGAGGATGGCCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTT 552
Query 184 GAAGATCTT 192
|||||||||
Sbjct 553 GAAGATCTT 561
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 172 bits (93), Expect = 3e-42
Identities = 159/189 (84%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 10 AACATGTTTC-AGAGCAAGACATTGGTGTCTAT-AAGGCTTGCA-AATGTAGAGCTTGAA 66
||||| || | |||| ||||||||||| ||| | || |||| | || |||||| || ||
Sbjct 385 AACAT-TTACAAGAGTAAGACATTGGTCTCTTTGAA-GCTT-TATAACGTAGAG-TTAAA 440
Query 67 -AATAAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATTT 124
||| ||| | ||||||||||||||||||||||||||||| || | || || || ||||
Sbjct 441 GAATCCAGAGT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTT 499
Query 125 GTT-ACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCTGTTCTT 183
|| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 500 -TTCACGGTGAGGATGGTCCTTTGGTCGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTT 558
Query 184 GAAGATCTT 192
|||||||||
Sbjct 559 GAAGATCTT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5