BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915674
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 556 8e-158
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 316 2e-85
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 296 2e-79
AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domain... 159 3e-38
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 556 bits (301), Expect = 8e-158
Identities = 626/777 (81%), Gaps = 46/777 (6%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTATTG- 59
|||||||||||| ||||| | ||||||| |||| |||| |||||| |||||| ||| ||
Sbjct 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTT-TTA-TGC 421
Query 60 -TTCTTCTGTCAAAAGATATGGTTTCTTGCGTGAGAACATTTACAAGAGCAAGACATTGG 118
| ||| || | | || | || |||| ||| | |||||||||||||||||||||||||
Sbjct 422 ATACTTTTGAC-AGAG-T-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGG 478
Query 119 TCTTTTTGAACCTT-TTCAATGTAGAGTTAAAGAATCCAAAGTTTGTTGTTTCTCTACCT 177
||| |||||| ||| | || ||||||||||||||| || | ||||||||||||||||||
Sbjct 479 TCTCTTTGAAGCTTCAT-AACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCT 537
Query 178 TATCTCAAGATCATGCGTCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTCTGGTTC 235
| |||||||||| || || || || | |||||| |||||||||||||||| |||||
Sbjct 538 TGTCTCAAGATCTTGAAACT-GG-AGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTG 595
Query 236 TTGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTG 295
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 596 TGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTG 655
Query 296 ATACTT-TGACTCACAAAGTT-TTGCTGTTTCTGCGTGTGAGCTCTCAGACTCTGAAAAA 353
||| || ||| || |||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 656 ATA-TTAGGACACATAAAGTTCTT-CTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAG 713
Query 354 CCTTGGTTTATATTTTGCGA-CATATAAGGGT-GATACAGATTTTTCAGTTGAGATTGAT 411
| || ||| ||||||||| | ||||||| | | |||||||||||||||||||||||||
Sbjct 714 CTTTACCTTACATTTTGCGATC-TATAAGGATCG-TACAGATTTTTCAGTTGAGATTGAT 771
Query 412 GCTCCACGACTCAAGTATATGACTGTTAAAGACATTCAATCTGATAACATTGTGGTAAAG 471
|||||| |||||||||||||||||||| || | | ||||||||||| |||||||||||||
Sbjct 772 GCTCCAAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAG 831
Query 472 AACCTGAGCTCCTTGTTCATG-ATCAACATTCGTACCAAATATATTCCATCGAGACCTAA 530
|||||||| |||||||||| | ||| ||||| |||| |||| || ||| | ||||| | |
Sbjct 832 AACCTGAGTTCCTTGTTCA-GCATCGACATTGGTACTAAATTTAATCCTTTGAGACATGA 890
Query 531 GGACTTTAAA-A-----AAT-TTTG-T--GAtttttttACCGGCATATCTAGTGTAAGAC 580
||| | ||| | ||| ||| | |||||||| ||||| ||||||||||||| ||
Sbjct 891 GGA-TCTAAGGATGCGTAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGTAAAAC 949
Query 581 ATATGATAATC-GACCTGCCTATTCTAGAGAGGCTTTAC-CCTAATT-ACAACTTCGGAC 637
||||||| ||| | || | ||| ||||| ||| | ||| ||| | ||| |||||
Sbjct 950 ATATGATCATCTGTT-TGTGGAGTCTCCAGAGGTTTT-CTCCTTATTCAAAACC-CGGAC 1006
Query 638 CGATTCCCAAATTCCTTAACTTGTATTATTTGGAGGCTGAGGTCAGCCGATCATCG-CTA 696
|||||||||||||| ||||||||| |||| | || || | | | ||||| | |
Sbjct 1007 TGATTCCCAAATTCCAGAACTTGTATCATTTAAAAGCACAGATGTGGAGCTCATCAAC-A 1065
Query 697 CAACT-ATTGTCGGCCTTTCTTGAAAGCT-CTCCAAATCTGAAAACCCTCATTTTGG 751
|| || |||| || |||||||| |||| | ||||||||||||| |||||| ||||
Sbjct 1066 CA-CTTATTGGAAGCGTTTCTTGAGAGCTGC-CCAAATCTGAAAAACCTCATCTTGG 1120
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 316 bits (171), Expect = 2e-85
Identities = 296/354 (84%), Gaps = 17/354 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTATTGT 60
|||||||||||| ||||||| |||||| ||||||||||||||||| |||||| || ||
Sbjct 289 ATGGAGTTGATCGGTACAGTGGTTGATTGTGGAATTCAACATTTGTATGTTT-ATA-TG- 345
Query 61 TC-TTC-TGTCAAAAGA-TATGGTTTCTTGCGTGAGAACATTTACAAGAGCAAGACATTG 117
| | | ||| || ||| | || |||| | ||| | ||||||||||||||||||||||||
Sbjct 346 -CATACTTGT-AATAGAGT-TGATTTCATACGTCAAAACATTTACAAGAGCAAGACATTG 402
Query 118 GTCTTTTTGAACCTTT-TCAATGTAGAGTTAAAGAATCCAAAGTTTGTTGTTTCTCTACC 176
|||| |||||| |||| | || |||||||| ||||||||| | |||||||||||||||||
Sbjct 403 GTCTCTTTGAAGCTTTAT-AACGTAGAGTTGAAGAATCCAGACTTTGTTGTTTCTCTACC 461
Query 177 TTATCTCAAGATCATGCGTCT-AGGCAGAGTTTGTCGCGGTGAGGATGGTCCTCTGGTTC 235
|| |||||||||| || || | | | | ||||| |||||||||||| ||| |||||
Sbjct 462 TTGTCTCAAGATCTTGAAACTGATG-AAAATTTGTTACGGTGAGGATGGCCCTTTGGTTG 520
Query 236 TTGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTG 295
| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 521 TGGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAAGCCTTTTG 580
Query 296 ATACTTTGACTCACAAAGTTTTGCTGTTTCTGCGTGT-GA-GCTCTCA-GACTC 346
||| ||||||||| | ||| | |||||||||||| | || |||| || |||||
Sbjct 581 ATATTTTGACTCAGGACGTTATACTGTTTCTGCGTATTGATGCTC-CACGACTC 633
Score = 82.4 bits (44), Expect = 6e-15
Identities = 71/84 (85%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 406 ATTGATGCTCCACGACTCAAGTATATGAC-TGTTAAAGACATTCAATCTGATAACATTGT 464
||||||||||||||||||||||||||||| | ||| || | || || ||||| ||| |
Sbjct 616 ATTGATGCTCCACGACTCAAGTATATGACATTTTAC-GAGAGTCGATTTGATAGGATTAT 674
Query 465 GGTAAAGAACCTGAGCTCCTTGTT 488
|||||||||| |||| ||||||||
Sbjct 675 GGTAAAGAACATGAGTTCCTTGTT 698
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 296 bits (160), Expect = 2e-79
Identities = 259/304 (85%), Gaps = 17/304 (6%)
Strand=Plus/Plus
Query 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTATTGT 60
|||||||||||| ||||| | |||||||||||||||||||||||| |||||| || ||
Sbjct 295 ATGGAGTTGATCGGTACACTGGTTGATCGTGGAATTCAACATTTGTATGTTT-ATA-TG- 351
Query 61 TC-TTC-TGTCAAAAGA-TATGGTTTCTTGCGTGAGAACATTTACAAGAGCAAGACATTG 117
| | | ||| || ||| | || |||| | ||| | |||||||||||||| |||||||||
Sbjct 352 -CATACTTGT-AACAGAGT-TGATTTCATACGTCAAAACATTTACAAGAGTAAGACATTG 408
Query 118 GTCTTTTTGAACCTTT-TCAATGTAGAGTTAAAGAATCCAAAGTTTGTTGTTTCTCTACC 176
|||| |||||| |||| | || |||||||||||||||||| |||||||||||||||||||
Sbjct 409 GTCTCTTTGAAGCTTTAT-AACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTACC 467
Query 177 TTATCTCAAGATCATGCGTCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTCTGGTT 234
|| |||||||||| || || || || | ||| || |||||||||||||||| ||| |
Sbjct 468 TTGTCTCAAGATCTTGAAACT-GG-AGAATATTTTTCACGGTGAGGATGGTCCTTTGG-T 524
Query 235 C-TTGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTT 293
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 CGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTT 584
Query 294 TGAT 297
||||
Sbjct 585 TGAT 588
> AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:18155837-18157340 FORWARD LENGTH=1170
Length=1170
Score = 159 bits (86), Expect = 3e-38
Identities = 503/694 (72%), Gaps = 70/694 (10%)
Strand=Plus/Plus
Query 93 GAACATTTACAAGAGCAAGACATTGGTCTTTTTGAACCTTTTCAAT--GTAGAG-TTAAA 149
||||||||| ||||| ||||||||||| | ||| || ||| | || |||||| || |
Sbjct 225 GAACATTTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGT--ATGCGTAGAGCTT-GA 281
Query 150 GAATCCAAAGTTTGTTGTTTCTCTACCTTATCTCAAGATCATGCGTCTAGGCAG-AGTTT 208
||||||||||||||||||||||||||||| |||||||||||||| ||||| | | ||
Sbjct 282 GAATCCAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAAAATAATTG 341
Query 209 GTCGCGGTGAGGATGGTCCTCTGGTTCTTGAGAAGCTCATCTCAGGATGTCCTGTTCTTG 268
|| |||| | |||| |||| ||||| | ||||| |||||| |||| |||| ||||||||
Sbjct 342 GTA-CGGTTATGATGCTCCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTG 400
Query 269 AAGATCTTAA-GCTGATTAGGCCTTT-TGATACTT-TGACTCACAAAGTTTTGC-TGTTT 324
||||||||| | || | ||| || ||||| | | | | || | | | ||| | ||
Sbjct 401 AAGATCTTACCG-TGGTAAGGA-TTCATGATA-TGGTAA-T-ACCA-GATCTGCCTCTT- 453
Query 325 CTGCGTGTGA-GCTCTCAGACTCTGAAAAACCTTG-GTTTA-TATTTTGCGACATATA-A 380
|| | ||||| | |||| ||| ||||| | | || ||||| | ||| | | | | |
Sbjct 454 CTACATGTGAAG-TCTCTGACACTGAAGATC-TTACGTTTAGTGTTT-G--ATTTGGAGA 508
Query 381 GGGTGA-TAC-AGAT-T-TTTCAGTTGAGATTGATGCTCCACGACTCA-AGTATATGACT 435
| ||| ||| | | | |||| || ||||||||||||||| ||| | ||||||||| |
Sbjct 509 TGATGACTACTATACCTATTTCGGTGGAGATTGATGCTCCAAAACT-AGAGTATATGAGT 567
Query 436 GTTA-AAGACATTCAATCTGATAACATTG-TGGTAAAGAACCTGAGCTCCTTGTTCATGA 493
||| || | | || ||||||| || | |||||||||| ||||| || ||||||| |
Sbjct 568 TTTATAA-ATAGGCACTCTGATA-CAATCATGGTAAAGAATCTGAGTTCATTGTTCAAGT 625
Query 494 TCAA-CATTCG-TACCAAATATATTCC-ATCGAGA-CCTAAGGA-CTTTAAAAA-ATTTT 547
| || | || | ||| ||| | | | | | || ||| ||| | | | | ||| |
Sbjct 626 TAAATC-TT-GATACTGAAT-T-TGGCTA-C-AGTTCCTT-GGAACCG-AGAGATATTAT 677
Query 548 --GTGAtttttttACCGGCATATCTAGTGTAAGACATATGATAATCGAC-CTGCCTATTC 604
|||| || | || || ||||| ||||||||||| ||||| ||| | | | || ||
Sbjct 678 CCGTGACGTTCTCACTGGTATATCGAGTGTAAGACAGATGATCATCT-CTCAACGTACTC 736
Query 605 TAGAGAGGCTT-TACCCTAATT-ACAACTTCGGACCGATTCCCAAATTCCTTAACTTGTA 662
||||| | | | | | | ||| | |||| ||| || ||||||||||||| | || | |
Sbjct 737 TAGAG-GTCATATGTCGTTATTCAAAACT-CGGGCCTATTCCCAAATTCCATCACCTATC 794
Query 663 TTATTTGGAGGCTG-AGG-TC-AGC-CGATCATCGCTACAACTATTGTCGGCCTTTCTTG 718
| ||||| |||||| | || ||| | ||||| ||||||||||| | ||||||||||
Sbjct 795 TCATTTGAAGGCTGCATTCTCCAGCAC-ATCAT---TACAACTATTGCCCGCCTTTCTTG 850
Query 719 AAAGCT-CTCCAAATCTGAAAACCCTCATTTTGG 751
| |||| | ||||| ||||||| ||||| ||||
Sbjct 851 AGAGCTGC-CCAAACCTGAAAAAACTCATCTTGG 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5