BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915675
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domain... 217 9e-56
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 189 2e-47
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 189 2e-47
AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 167 9e-41
> AT5G44970.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:18155837-18157340 FORWARD LENGTH=1170
Length=1170
Score = 217 bits (117), Expect = 9e-56
Identities = 231/284 (81%), Gaps = 15/284 (5%)
Strand=Plus/Plus
Query 79 TGGATCGCCACAGCGGTTGATCGCGGGGTTCGA-GTTCTTGATGTT-GAGGCTAAGAAT- 135
||||||||| ||||||||||||||||| ||| | || | ||| || ||| | || |||
Sbjct 136 TGGATCGCCGCAGCGGTTGATCGCGGGATTCAACATT-TAGAT-TTCGAGACCAAAAATC 193
Query 136 -GT-TCTGTTTGTCATTGATACCATGCCTTTGAACATGTT-CCAGAGCAAAACATTGGTG 192
| ||| ||| ||| ||| |||||||| ||||||| || |||| || |||||||||
Sbjct 194 CTTCTCTCTTTCTCAAAGATTCCATGCCTATGAACAT-TTATAAGAGTAAGACATTGGTG 252
Query 193 TCTTTAAGGCTTGCAAATGTAGAGCTTGAAAAT-C-AAGATATTGTTGTTTCTCTACCTT 250
||||||| ||||| | ||||||||||| ||| | ||| | ||||||||||||||||||
Sbjct 253 TCTTTAAAGCTTGTATGCGTAGAGCTTGAGAATCCAAAG-T-TTGTTGTTTCTCTACCTT 310
Query 251 GTCTCAAGATCATGCATCTAGATAACATTTGTTACGGTGAGGATGGTCCTTTGATTGCGG 310
|||||||||||||||||||||| || | ||| |||||| | |||| ||||||| ||| ||
Sbjct 311 GTCTCAAGATCATGCATCTAGAAAATAATTGGTACGGTTATGATGCTCCTTTGGTTGTGG 370
Query 311 AGAAGCTCATCTCTGGATGTTCT-GTTCTTGAAGATCTTACCGT 353
|||| |||||| | || ||| || ||||||||||||||||||||
Sbjct 371 AGAAACTCATCGCAGGGTGT-CTTGTTCTTGAAGATCTTACCGT 413
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 189 bits (102), Expect = 2e-47
Identities = 162/189 (86%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 166 AACATGTT-CCAGAGCAAAACATTGGTGTCTTT-AAGGCTTGCA-AATGTAGAGCTTGAA 222
||||| || | ||||||| |||||||| ||||| || |||| | || |||||| |||||
Sbjct 379 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-TATAACGTAGAG-TTGAA 434
Query 223 -AATCAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAT-AACATT 279
|||| ||| | ||||||||||||||||||||||||||||| || | || ||| || |||
Sbjct 435 GAATCCAGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACT-GATGAAAATT 492
Query 280 TGTTACGGTGAGGATGGTCCTTTGATTGCGGAGAAGCTCATCTCTGGATGTTCTGTTCTT 339
||||||||||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||
Sbjct 493 TGTTACGGTGAGGATGGCCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTT 552
Query 340 GAAGATCTT 348
|||||||||
Sbjct 553 GAAGATCTT 561
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 189 bits (102), Expect = 2e-47
Identities = 162/189 (86%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 166 AACATGTT-CCAGAGCAAAACATTGGTGTCTTT-AAGGCTTGCA-AATGTAGAGCTTGAA 222
||||| || | ||||||| |||||||| ||||| || |||| || || |||||| || ||
Sbjct 454 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-CATAACGTAGAG-TTAAA 509
Query 223 -AA-TCAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATT 279
|| || ||| | ||||||||||||||||||||||||||||| || | || || || |||
Sbjct 510 GAATTC-AGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATT 567
Query 280 TGTTACGGTGAGGATGGTCCTTTGATTGCGGAGAAGCTCATCTCTGGATGTTCTGTTCTT 339
||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 568 TGTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTT 627
Query 340 GAAGATCTT 348
|||||||||
Sbjct 628 GAAGATCTT 636
> AT5G44940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:18149369-18150892 FORWARD LENGTH=1134
Length=1134
Score = 167 bits (90), Expect = 9e-41
Identities = 158/189 (84%), Gaps = 12/189 (6%)
Strand=Plus/Plus
Query 166 AACATGTT-CCAGAGCAAAACATTGGTGTCTTT-AAGGCTTGCA-AATGTAGAGCTTGAA 222
||||| || | |||| || |||||||| ||||| || |||| | || |||||| || ||
Sbjct 385 AACAT-TTACAAGAGTAAGACATTGGTCTCTTTGAA-GCTT-TATAACGTAGAG-TTAAA 440
Query 223 -AATCAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATTT 280
|||| ||| | ||||||||||||||||||||||||||||| || | || || || ||||
Sbjct 441 GAATCCAGAGT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTT 499
Query 281 GTT-ACGGTGAGGATGGTCCTTTGATTGCGGAGAAGCTCATCTCTGGATGTTCTGTTCTT 339
|| |||||||||||||||||||| | | ||||||||||||||| |||||| ||||||||
Sbjct 500 -TTCACGGTGAGGATGGTCCTTTGGTCGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTT 558
Query 340 GAAGATCTT 348
|||||||||
Sbjct 559 GAAGATCTT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5