BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915709
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1070 0.0
AT4G20160.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 95.3 2e-18
> AT5G44690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G20160.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:18029338-18032293 REVERSE LENGTH=2358
Length=2358
Score = 1070 bits (579), Expect = 0.0
Identities = 934/1092 (86%), Gaps = 77/1092 (7%)
Strand=Plus/Plus
Query 1 ATGGCTTCGAGGGATGGTAACAAGAAAGAAAAGAATCTCAAAGTTTTTGTTGGAGATCGT 60
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCTTCGAGGGATGGTAACAAGAAAAAAAAGAATCTCAAAGTTTTTGTCAGAGATCGT 60
Query 61 TTCAACAGCTGTCGTGTTATAATTGTCGATGATTCTGGAAGTAACAAAGATTGGAAAAGT 120
| |||||||| ||||||| | | |||||||||||||||||||| ||||| |||| ||
Sbjct 61 TACAACAGCTTTCGTGTTTTGCCTATCGATGATTCTGGAAGTAACGAAGATGGGAAGCGT 120
Query 121 AAAGAGGTTCTTGAATGTTTTTCAAGATCCTCTGTTTTTGAAACAGGGGAATCTCTGCAG 180
||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 AAAGAGGTTATTGAATGTTCTTCAAGATCCCCTGTTTTTGAAACAGGGGAATCTTTGCAG 180
Query 181 ATTCCTTCTTCTTATCCGCTAGAGACCAATTCCAATCCATTTTATAATCCGGGTCAACCT 240
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 181 ATTCCTTCTTCTTATCCACTAGAGACCAATTCCAATCCATTTTATATTCCTGGTCAACCT 240
Query 241 GAGACCTCGTCAAGAAATGGTGTTATCATGGGAG--------CT-GTTCAGTTTTGGGAA 291
||||||||||||||||||||||| | |||||||| || |||||| ||||||||
Sbjct 241 GAGACCTCGTCAAGAAATGGTGTCAGCATGGGAGCTTCTTCTCTGGTTCAGATTTGGGAA 300
Query 292 GCTCGGTCGCAGCAGTCAAGCTCGAGTCTAAGTCAATCGCTAATTGATAGCAGGACAAGT 351
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
Sbjct 301 GCTCGGTCGCAGCAGTCAAGTTCGAGTCTAAGTCAATCGCTACTCGATAGCAGG---A-- 355
Query 352 TCTGGACTAAGTCTCTCCGACATTTCGAATTCGAGTTCATTTTCTGAATTTCTCAACGAC 411
| | ||| ||| || | || | || || | || || ||||||||||||
Sbjct 356 -C--G----AGT-TCT--GA-A--TC--A----AG-TC--TCTCCGACTTTCTCAACGAC 393
Query 412 CAGGCGAGAAAAAATAACGAAAGTAGTAGTGAAGAAATAGA---------T---TCAGAC 459
|||||||||||| |||||||| ||| ||||||||||||| | |||||
Sbjct 394 GAGGCGAGAAAAAGCAACGAAAGCAGTGGTGAAGAAATAGATTGGTTTCCTCAATCAGAT 453
Query 460 ATGAGTAATGTTTCAAATTCTTATGAGAATGATGGAGAAGGAAGATGTTTTCTTGAGCTT 519
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATGAATAATGTTTCAAATTCTTATGAGAATGATGGAGAAGGAAGATGTTTTCTTGAGCTG 513
Query 520 GCTAGTTGTAGTACCCCTAGGATAAGAGGACGGCAAGCAAATGAAGATGTTTGTAAGATG 579
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 514 GCTAGTTGTAGTACTCCTAGGATAAGAGGACGGCAAGCAAGTGAAGATGTTTGTAAGATG 573
Query 580 ATTTTGGGTAACCGAAAAAACGAGCTAGAATGGCTCGCTGGTCGCTACGCGGTTTCAAAG 639
|||||| || ||||| |||| ||||| |||| ||||| ||||||||||||||||||||||
Sbjct 574 ATTTTGCGTGACCGAGAAAATGAGCTTGAATTGCTCGGTGGTCGCTACGCGGTTTCAAAG 633
Query 640 TTCTCGCCTCGCGGATGTGGGCGTCTTCAGTATATGCTTA-GAATCCGAAGTTTCGAAAG 698
|||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 634 TTCTCGCCTCGCGGTTGTGGGCGTCTTCAGTATATGCTTATGA-TCCGAAGTTTGGAAAG 692
Query 699 GTGCATTGGGACTCAAGAAAAATATCGGTCGAA-T-A--TG-AG---GGAT---A-GAT- 745
|||||||| || |||||||| |||||||||||| | | || | || | | ||
Sbjct 693 GTGCATTGTGATTCAAGAAAGATATCGGTCGAAATCAGATGTAAACCGGTTTTCACGAGG 752
Query 746 AT--AGGAC-A-A-ATA---CTGA------GAAGGGATCTGGGAGCAATCCGAATAGCGC 791
|| |||| | | ||| || | |||||||| | |||||||| |||||||||
Sbjct 753 ATCTAGGAATAGATATATGGCTAATACTAAGAAGGGATTTCGGAGCAATTTGAATAGCGC 812
Query 792 AGTAGAAACTAAAAATTTGTCTAGACTAATATCTTTTCGGGTGGAGAATGTTTTGCAAGA 851
||||||||| |||||||||||| || || ||| |||| ||||| ||| ||||||||||||
Sbjct 813 AGTAGAAACAAAAAATTTGTCTGGAGTAGTATATTTTAGGGTGAAGAGTGTTTTGCAAGA 872
Query 852 AACAATGGATAAAAGTAACACAATGGAGAATCAGGCCGCCGCTTATAAGCCGGAAATTGC 911
||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 873 AACAATGGAGAAAAGTAACACAAGGGAGAATCAGGCCGCGGCTGATAAGCCGGAAATTGC 932
Query 912 CAATAAACCCGTCTTTACTGAAGCGGCAAGCAATGAGAACGGTTCAAAGAAACCTGAAAT 971
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 933 CAATAAACCCGTCTTTAATGATGCTGCAAGCAATGAGAACGGTTCAAAGAAACCTGAAAT 992
Query 972 TGAGAGGAAAGCTACAGAAGAAAAAGAAGGGTTGAGGAAAGCTATTGTGAAGGAAGGAGA 1031
|||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 993 TGAGCGGAAAGCTACAGAAGAAGGAGAAGGGTTGAGGAAAGTTACTGTGAAGGAAGGAGA 1052
Query 1032 AGAAACGAACAA 1043
||||||||||||
Sbjct 1053 AGAAACGAACAA 1064
Score = 872 bits (472), Expect = 0.0
Identities = 657/747 (88%), Gaps = 10/747 (1%)
Strand=Plus/Plus
Query 1042 AAAACCATGGAGATTGAGGAATATAGAAGCAACCCTCAAGAAGGGACATCAATGGTTTGT 1101
||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1231 AAATCCATGGAGATTGAGGAATATAGAAGCAACCCTCAAGAAGTGACATCAGTGGTTTGT 1290
Query 1102 TTGGATAGAAGAAA-GGAAGAAGAAACTGTAAGTCACGTATTAAGAGAGTGCGGTAAAGA 1160
||||||||| |||| ||| |||||||||| ||| || ||||| |||||| | ||||||||
Sbjct 1291 TTGGATAGA-GAAAAGGATGAAGAAACTGCAAGACAAGTATTTAGAGAGAGTGGTAAAGA 1349
Query 1161 CGACATATTTTCACAAAACGATGAAGACACATCAAAAGCCGAGAAGCAAGAAGCTTCAGA 1220
|| | || |||||||||||||||||| ||||||||||||||||||||| |||| | ||
Sbjct 1350 GGAAAAATCTTCACAAAACGATGAAGAAACATCAAAAGCCGAGAAGCAACAAGCAGCGGA 1409
Query 1221 ACCGTTGTGCCTGATTCTTGAATCACCAATATTTCTAAATGATTTGGATGAAAATGAAAC 1280
| | |||| || |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1410 AACATTGTTTCTAATTCTTGAATCACCAATATTTCTAAATGCTTGGGATGAAAATGAAAC 1469
Query 1281 GGAATATGAAGAAAATGAAGATTACGATGGAGAGAGTGTGTATCATGATTGGATTAGCGA 1340
||| |||||||||||||||||| | || |||||| | ||||| ||||||||||||| ||
Sbjct 1470 AGAAAATGAAGAAAATGAAGATTGCAATAGAGAGATTATGTATTATGATTGGATTAGTGA 1529
Query 1341 TGTTTCGCGGCCACGAAGTTACTGGGAAGATCTCAAGAAAGAACGGGAGCTCGAGGTTAT 1400
| | ||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 1530 TATCTCGCGGCCAAGAAGTTATTGGGAAGATCTCAAGAAACAACGGGTGCTCGAGGTTAT 1589
Query 1401 GAACAAGAATTCAGAGAAAGATGATATGTGGAACTTGATCAAGTGGAGGACTGTTTCTAG 1460
|||||| | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1590 GAACAATATTTCCGAGAAAGGCGATATGTGGAACTTGATCAAGTGGAGGACCGTTTCTAG 1649
Query 1461 CTTCCTCGAAGGTGGTTTTCGGGAAAAGATTGATAAAATCATGATCTCCTGTATGCAAAA 1520
|||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1650 CTTCCTCGAAGGTGATTTTCGGGAAAAGATTGATAAAATCATGATCTCATGCGTGCAAAA 1709
Query 1521 GAGGTTAGAAGTAGAAAGCAATCTTGTagaagaagaagaagaagaagaTAACGAGGAGAG 1580
||||| |||| ||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 1710 GAGGTCAGAAATAGGAAGCAATCTTGTAGAAGAAGAAGAAG--G----TAACGAGGAGAC 1763
Query 1581 TTTGGTTGAGTGTTCAGCAAGGTGCCAAGAGAACCTAGAAGAAAATGAAACAGAGAAGGA 1640
||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| | |||
Sbjct 1764 TTTGGTTGAGTGTTCAGAAAGGTACCAAGGGAACGTAGAAGAAAATGAAACAAAAAAGTT 1823
Query 1641 AAATC-TAGAACCAGTAACTGAAACACAGATGATATGTGATCTCAGAGAACAAATCAAAC 1699
|| || | ||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1824 AA-TCCTTGAACCAGAAACTGAAACACAGATGATATGTGATCTCAAACAACAAATCAAAC 1882
Query 1700 TGCTTCAAAGAGAAATGCTCGAACTAAAAATTTTGGTCAAATCTTGTGTCGATTTTCAAA 1759
|||||||||||| || || |||||| ||| |||||| ||||||||||| ||||| || |
Sbjct 1883 AGCTTCAAAGAGATATTCTTGAACTACAAAGTTTGGTAAAATCTTGTGTTGATTTCCAGA 1942
Query 1760 AATCCATGCAATTCGAATCACTGTCTG 1786
||||| || ||||||||||||| ||||
Sbjct 1943 AATCCTTGGAATTCGAATCACTTTCTG 1969
> AT4G20160.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage,
M germinated pollen stage, 4 anthesis, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: RING/U-box superfamily protein (TAIR:AT1G30860.1);
Has 64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source:
NCBI BLink). | chr4:10890983-10894971 FORWARD LENGTH=3567
Length=3567
Score = 95.3 bits (51), Expect = 2e-18
Identities = 138/177 (78%), Gaps = 17/177 (10%)
Strand=Plus/Plus
Query 1252 TTTCTAAATGATTTGGATGAAAATGAAACGGAATATGAAGAA-AATGAAGATTACGATGG 1310
||| ||||||||| ||||| ||| |||| |||| | |||||| || ||||| | ||||
Sbjct 2728 TTTGTAAATGATTGGGATGGAAACGAAATGGAAGAAGAAGAAGAA-GAAGA--A-TATGG 2783
Query 1311 AGA-GA--GT-GT-G-TATCATGATTGGATT-AGCGATGTTTCGCGGCCACGAAGTTACT 1363
||| | | | | || ||||||||||| | |||| | |||||||||||||||||||
Sbjct 2784 AGATTATTTTAATGGAGATGATGATTGGATTCA-CGATATATCGCGGCCACGAAGTTACT 2842
Query 1364 GGGAAGATCTCAAG-AAAGAACGGGAGCTCGAGGTTATGAACAA-GAATTCAGAGAA 1418
|||||||||| ||| |||||| || | || |||||| | |||| |||| |||||||
Sbjct 2843 GGGAAGATCT-AAGGAAAGAAAGGTATCTTGAGGTTCTCAACACTGAAT-CAGAGAA 2897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92218401165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5