BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915718
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33400.1 | Symbols: TPR9 | Tetratricopeptide repeat (TPR)-li... 455 1e-127
> AT1G33400.1 | Symbols: TPR9 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:12104784-12109524 REVERSE LENGTH=2540
Length=2540
Score = 455 bits (246), Expect = 1e-127
Identities = 276/290 (95%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 1 GCGTGCTATTTAGCTGGAGAACTGGTGGATGCAAGAAAGCATTGTGAAGCGTCCATTAAG 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2146 GCGTGCTATTTAGCTGGGGAACTGGTGGATGCAAGAAAGCATTGTGAAGCATCCATTAAG 2205
Query 61 ATTCTGAAGAAGCTGTATGAGGATGAACATGTAGTGATTGGAAATGAAATGGTGAAGCTT 120
|||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2206 ATTCTGAAGAGGCTGTATGAGGATGAACACGTGGTGATTGGAAATGAAATGGTGAAGCTT 2265
Query 121 GCGTCGATTCAGCTTGCATCAGGTGA-TCGCAGTGGAGCTTGGGACACAACAAAGAG-TC 178
|||||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||
Sbjct 2266 GCGTCGATTCAGCTTGCATCAGGTGATTC-CAGTGGAGCTTGGGACACTACAAAGAGATC 2324
Query 179 TGTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTTATCTCC 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 -GTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTTATCTCC 2383
Query 239 CATGTCTTAAGCAAGAAGCCGCCAAAGCTATGAATTTGTCATCTTCTTAA 288
||||||||||||||||| | ||||||||| ||||||||||| ||||||||
Sbjct 2384 CATGTCTTAAGCAAGAAACTGCCAAAGCTGTGAATTTGTCAACTTCTTAA 2433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13270685736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5