BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915719
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33400.1 | Symbols: TPR9 | Tetratricopeptide repeat (TPR)-li... 366 4e-101
> AT1G33400.1 | Symbols: TPR9 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:12104784-12109524 REVERSE LENGTH=2540
Length=2540
Score = 366 bits (198), Expect = 4e-101
Identities = 224/236 (95%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 13 ATTGAGATTCTGAAGAGGCTATATGAGGATGAACATGTAGTGATTGGAAATGAAATGGTG 72
||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 2200 ATTAAGATTCTGAAGAGGCTGTATGAGGATGAACACGTGGTGATTGGAAATGAAATGGTG 2259
Query 73 AAGCTTGCGTCGATTCAGCTTGCATCAGGTGA-TCGCAGTGGAGCTTGGGACACAACAAA 131
|||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 2260 AAGCTTGCGTCGATTCAGCTTGCATCAGGTGATTC-CAGTGGAGCTTGGGACACTACAAA 2318
Query 132 GAG-TCTGTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTT 190
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 GAGATC-GTCTCAGATATTCTCAAAGTATTACGGGTCACATGCTGAGACTCTCTTCTCTT 2377
Query 191 ATCTCCCATGTCTTAAGCAAGAAGCCGCCAAAGCTGTGAATTTGTCATCTTCTTAA 246
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 2378 ATCTCCCATGTCTTAAGCAAGAAACTGCCAAAGCTGTGAATTTGTCAACTTCTTAA 2433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5