BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915732

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44575.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   302    1e-81


> AT5G44575.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 7 Blast hits to 7 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr5:17973838-17974998 FORWARD LENGTH=472
Length=472

 Score =  302 bits (163),  Expect = 1e-81
 Identities = 202/220 (92%), Gaps = 5/220 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAAAGAAGAGTGCTTCACAATTGGGGCTTGTGTTGTTTCTTCTGGTTG-TTCTTTT  59
            |||||| |||||||||||||||||||||| |||||| ||||||||||  ||| |||||||
Sbjct  38   ATGGAAGAGAAGAGTGCTTCACAATTGGGACTTGTGGTGTTTCTTCT-ATTGTTTCTTTT  96

Query  60   GGTCCCAACCCATACGGAGTCTGCTCTTCCTTCTCAACAAGAATCACTCCTAGTGATCGG  119
            |||||||||||||||||||||| | || |||||||||||||||||||||| |||||||||
Sbjct  97   GGTCCCAACCCATACGGAGTCTTCCCTGCCTTCTCAACAAGAATCACTCCCAGTGATCGG  156

Query  120  A---TCAAGGAAGTTGATGAGTAGCTATAAGACCAATAGTAACATAGATTTTGGGGGATC  176
            |   ||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct  157  ATCGTCAAGGAGGTTGATGAGTACCTATAAGACCAACAGTAACATAGATTTTGAGGGATC  216

Query  177  AATCAGTGGACAAGCCGGTGGTGGTAAACAAAATCCCTAG  216
            ||||||||||||||||||||||||| ||||||||||||||
Sbjct  217  AATCAGTGGACAAGCCGGTGGTGGTCAACAAAATCCCTAG  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5