BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915734

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15120.2 | Symbols:  | Ubiquinol-cytochrome C reductase hing...   132    3e-30


> AT1G15120.2 | Symbols:  | Ubiquinol-cytochrome C reductase hinge 
protein | chr1:5202648-5204193 FORWARD LENGTH=744
Length=744

 Score =  132 bits (71),  Expect = 3e-30
 Identities = 87/94 (93%), Gaps = 4/94 (4%)
 Strand=Plus/Plus

Query  172  TTCTTCCTTG---CTTCGAGTCCCGATCTCCTCTCTCAATCTCAGTCTGCAGCTTCCGAA  228
            ||||||||||   ||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct  131  TTCTTCCTTGCTTCTTCGAGTCTCGATCTCCTCTCTCAATCTCAGTCTTCAGCTTCC-AA  189

Query  229  TTGACTTTCAACATGGCAGATGATGAAGTTATTG  262
            |||||||||||||||||||||||||||||| |||
Sbjct  190  TTGACTTTCAACATGGCAGATGATGAAGTTGTTG  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5