BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915736

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44574.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   289    2e-77


> AT5G44574.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 6 Blast hits to 6 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr5:17970693-17971449 FORWARD LENGTH=532
Length=532

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 197/217 (91%), Gaps = 2/217 (1%)
 Strand=Plus/Plus

Query  178  AAACCTGCTCGTTTTAAAGTAAAAGCACGTGGAATTGAAGACGTGGGACAAGAGCGAACA  237
            |||||| || ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||
Sbjct  122  AAACCTACTAGTTTTAAAGTAAAAGCACGCGGAATAGAAGACGAGGGACAAGAACGAACA  181

Query  238  CACTCCATAAATATCAAAAAATCTGGAAGAAGCGTGGAGAAAACTCACCAATCAGAAGGT  297
            |||||| |||||| ||||||||||  |||||||||||||||||||||||| |||||||| 
Sbjct  182  CACTCCCTAAATAGCAAAAAATCTTCAAGAAGCGTGGAGAAAACTCACCATTCAGAAGGG  241

Query  298  AGGAGACTGAGC-ATTTATTTTCCAAAAGCGGGCATAAGGGCAGGACCTTCAAAAAGTGG  356
            |||||| ||||| || | ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  242  AGGAGATTGAGCAATGT-TTTTCCAAATGCGGGCATAAGAGCAGGACCTTCAAAAAGTGG  300

Query  357  TCAGGGTGGTGGTCGCATTCCCGTAGCCGCCCCCTAG  393
             |||||||||||||||||||||||||||||| |||||
Sbjct  301  ACAGGGTGGTGGTCGCATTCCCGTAGCCGCCTCCTAG  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5