BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915740 Length=447 Score E Sequences producing significant alignments: (Bits) Value AT5G05140.1 | Symbols: | Transcription elongation factor (TFII... 551 2e-156 > AT5G05140.1 | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1519913-1522667 FORWARD LENGTH=2121 Length=2121 Score = 551 bits (298), Expect = 2e-156 Identities = 403/448 (90%), Gaps = 29/448 (6%) Strand=Plus/Plus Query 1 ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAGGAGACAAAATCGCCGAG 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 531 ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAAAATCGCCGAG 590 Query 61 CTTTTATTCTCCTGCAGAGTGAGTCGTTGCATCGGATGCGACCATCTTGAATTGTCTATT 120 |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 591 CTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGAATTGTCTGTT 650 Query 121 CACGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGGTGGTGGTACG 180 | |||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct 651 CCCGGAGACGACGAGGCTAA------CCGTGGAACCACCGGAAATGGTGGTGGTGGTACG 704 Query 181 GCGGTTGATGAAGATTATGAGG-T--TGGTGGTAGT-AA-AGAG---AGC--A-A--AGC 227 |||||||||||||||||||||| | |||||||||| || |||| ||| | | ||| Sbjct 705 GCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGC 764 Query 228 --------TAAT-ATCAGATTGTTAGTAATTTATACATTTGATGAAGCTCACGCTTTGAG 278 |||| ||||||||||||| || ||||||||||||||||||| | |||||||| Sbjct 765 AGAGGGGATAATAATCAGATTGTTAGCAA-TTATACATTTGATGAAGCTGAGGCTTTGAG 823 Query 279 TGATGAGATTGAAGAGTTATCTGTGGTTTCTAAGGAGGTTGCTAGTATCAAAGAGATCTT 338 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 824 TGATGAGATTGAAGAGTTTTCTGTGGTTTCTAAGGAGGTTGCTAGGATCAAAGAGATCTT 883 Query 339 GCTCAACAAAGAAGATGATCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT 398 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 884 GCTCAACAAAGAAGATGAGCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT 943 Query 399 GATGTCTTTGAATGTGGATATTCTTAAG 426 |||||||||||||||||||||||||||| Sbjct 944 GATGTCTTTGAATGTGGATATTCTTAAG 971 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21263257827 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5