BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915740

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05140.1 | Symbols:  | Transcription elongation factor (TFII...   551    2e-156


> AT5G05140.1 | Symbols:  | Transcription elongation factor (TFIIS) 
family protein | chr5:1519913-1522667 FORWARD LENGTH=2121
Length=2121

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 403/448 (90%), Gaps = 29/448 (6%)
 Strand=Plus/Plus

Query  1    ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAGGAGACAAAATCGCCGAG  60
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  531  ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAAAATCGCCGAG  590

Query  61   CTTTTATTCTCCTGCAGAGTGAGTCGTTGCATCGGATGCGACCATCTTGAATTGTCTATT  120
            |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct  591  CTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGAATTGTCTGTT  650

Query  121  CACGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGGTGGTGGTACG  180
            | ||||||||||||||||||      |||||||||||||||  | || ||||||||||||
Sbjct  651  CCCGGAGACGACGAGGCTAA------CCGTGGAACCACCGGAAATGGTGGTGGTGGTACG  704

Query  181  GCGGTTGATGAAGATTATGAGG-T--TGGTGGTAGT-AA-AGAG---AGC--A-A--AGC  227
            |||||||||||||||||||||| |  |||||||||| || ||||   |||  | |  |||
Sbjct  705  GCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGC  764

Query  228  --------TAAT-ATCAGATTGTTAGTAATTTATACATTTGATGAAGCTCACGCTTTGAG  278
                    |||| ||||||||||||| || ||||||||||||||||||| | ||||||||
Sbjct  765  AGAGGGGATAATAATCAGATTGTTAGCAA-TTATACATTTGATGAAGCTGAGGCTTTGAG  823

Query  279  TGATGAGATTGAAGAGTTATCTGTGGTTTCTAAGGAGGTTGCTAGTATCAAAGAGATCTT  338
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  824  TGATGAGATTGAAGAGTTTTCTGTGGTTTCTAAGGAGGTTGCTAGGATCAAAGAGATCTT  883

Query  339  GCTCAACAAAGAAGATGATCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT  398
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  884  GCTCAACAAAGAAGATGAGCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT  943

Query  399  GATGTCTTTGAATGTGGATATTCTTAAG  426
            ||||||||||||||||||||||||||||
Sbjct  944  GATGTCTTTGAATGTGGATATTCTTAAG  971



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5