BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915742

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09486.1 | Symbols:  | pseudogene, 60S ribosomal protein L21...  52.8    1e-06


> AT1G09486.1 | Symbols:  | pseudogene, 60S ribosomal protein L21 
(RPL21B), temporary automated functional assignment; blastp 
match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630 
60S ribosomal protein L21 {Oryza sativa} 
| chr1:3062430-3063731 REVERSE LENGTH=1302
Length=1302

 Score = 52.8 bits (28),  Expect = 1e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Minus

Query  146  CCTGCGGCGACGAAACGAACAGACTAAA  173
            ||||||||||||||||||||||||||||
Sbjct  109  CCTGCGGCGACGAAACGAACAGACTAAA  82



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5