BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915751
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44550.1 | Symbols: | Uncharacterised protein family (UPF04... 968 0.0
AT4G20390.1 | Symbols: | Uncharacterised protein family (UPF04... 390 7e-108
> AT5G44550.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:17941875-17943213 REVERSE LENGTH=858
Length=858
Score = 968 bits (524), Expect = 0.0
Identities = 564/584 (97%), Gaps = 0/584 (0%)
Strand=Plus/Plus
Query 5 CAAAGCTCGCATTGGCTGCTACGAGCGGTAAGAGCTGCAAAATACTCTTAGGGCTGAGAT 64
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 CAAAGCTTACATTGGCTGCTACGAGCGGTAAGAGCTGCAAAATACTCTTAGGGCTGAGAT 109
Query 65 TACTTGCCTTCTCAGCCACGTTATCTGCAGCCATTGTAATGGGATTGAACAAAGAGACAG 124
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 110 TACTTGCCTTCTCAGCCACGTTATCTGCAGCTATTGTAATGGGACTCAACAAAGAGACAA 169
Query 125 AGACTTTTGTTGTGGGAAAAGTTGGAAATACTCCAATTAAAGCTACTTTCACTGCTAAGT 184
|||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 170 AGACTTTTATTGTGGGCAAAGTTGGAAATACTCCAATTCAAGCTACTTTTACTGCTAAGT 229
Query 185 TCGACCACACACCAGCTTTTGTGTTTTTCGTAGTGGCTAATGCAATGGTGAGCTTCCACA 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 230 TCGACCACACACCAGCTTTTGTGTTTTTCGTAGTAGCTAATGCAATGGTGAGCTTCCACA 289
Query 245 ACTTGTTGATGATTGCTCTTCAGATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGTC 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 290 ACTTGTTGATGATTGCTCTTCAGATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGGC 349
Query 305 TTCTCTCTGTCGCCATTCTTGACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACG 364
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCTCTCAGTCGCCATTCTTGACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACG 409
Query 365 CGGCGGCGTTCATGGCTGAGGTAGGAAAGAACGGGAACAAACACGCGAGATGGGACAAAA 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CGGCGGCGTTCATGGCGGAGGTAGGAAAGAACGGGAACAAACACGCGAGATGGGACAAAA 469
Query 425 TCTGTGACAGATTCGCCACTTACTGTGATCACGGCGCCGGAGCATTAATCGCCGCCTTCG 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 470 TCTGTGATAGATTCGCCACTTACTGTGATCACGGCGCCGGAGCATTAATCGCCGCATTCG 529
Query 485 CCGGCGTAATCCTTATGCTCATCATCTCCGCCGCGTCAATCTCTCGTCTCGTCCAGCAAA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 530 CCGGCGTAATCCTTATGCTCATCATCTCCGCCGCGTCAATCTCTCGTCTCGTCCAACCTA 589
Query 545 ATAAATGCTGCTCCACCACCGCATCTCCCTCCGTCGTCCCCTGA 588
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 ATAAATGCTGCTCCACCACCGCATCTCCCTCGGTCGTCCCCTGA 633
> AT4G20390.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:11007035-11008066 FORWARD LENGTH=824
Length=824
Score = 390 bits (211), Expect = 7e-108
Identities = 450/563 (80%), Gaps = 25/563 (4%)
Strand=Plus/Plus
Query 34 AAGAGCTGCAAAATACTCTTAGGGCTGAGATTACTTGCCTTC-TCAGCCACGTTATCTGC 92
|||||||| ||| ||||||| ||||||||| || |||| ||| | || || ||| ||||
Sbjct 73 AAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCAT-GGCTACTTTAGCTGC 131
Query 93 AGCCATTGTAATGGGATTGAACAAAGAGACAGAGACTTTTGTTGTGG-GAAAAGTTGGAA 151
||||||||||||| | | |||||||||||| |||| || ||||||| | | |||| |
Sbjct 132 AGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCCACCA-TTGGTA 190
Query 152 ATACTCCAATTAAAGCTACTTTCACTGCTAAG-TTCGACCACACACCAGCTTTTGTGTT- 209
| ||| |||||||| ||||| || |||||| ||| | |||||||| |||||||||||
Sbjct 191 CTGTTCCTATTAAAGCCACTTTAACCGCTAAGTTTC-AGCACACACCGGCTTTTGTGTTC 249
Query 210 TTTCG-TAGTGGCTAATGCAATGGTGAGCTTCCACAACTTGTTGATGATTGCTC-TTCAG 267
||| | || | ||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 250 TTT-GTTA-TAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTG-TGGTTCAG 306
Query 268 ATATTTGGAG--GGAAAATGGAGTTCACTGGTTTTCGTCTTCTCTCTGTCGCCATTCTTG 325
|| ||| || ||||| |||||| || ||| ||||||| |||||| ||||||||||||
Sbjct 307 AT-TTTC-AGCCGGAAACTGGAGTACAAAGGTCTTCGTCTCCTCTCTATCGCCATTCTTG 364
Query 326 ACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACGCGGCGGCGTTCATGGCTGAGG 385
|||||||||| | || ||| | || ||||| ||||||||||||| |||| |||| |||
Sbjct 365 ACATGCTAAACGCAACACTAGTATCTGCGGCTGCAAACGCGGCGGTGTTCGTGGCAGAGC 424
Query 386 TAGGAAAGAACGGGAACAAACACGCGA-GATGGGACAAAATCTGTGACAGATTCGCCACT 444
|||| |||||||| ||||| ||||| | | ||| ||||| |||| ||||| ||| |||||
Sbjct 425 TAGGGAAGAACGGAAACAAGCACGCCAAG-TGGAACAAAGTCTGCGACAGGTTCACCACT 483
Query 445 TACTGTGATCACGGCGCCGGAGCATTAATCGCCGCCTTCGCCGGCGTAATCCTTATGCTC 504
||||||||||||||||| |||||| | ||||| || |||||||| || || || ||||||
Sbjct 484 TACTGTGATCACGGCGCAGGAGCAATCATCGCAGCATTCGCCGGAGTCATTCTAATGCTC 543
Query 505 ATCATCTCCGCCG-CGTCAATCTCTCGTCTCGTCCAGCAAAA-TAAATGCTGCTCCACCA 562
|| | ||||||| | || || || || ||| | | ||| |||| || ||||||||
Sbjct 544 CTCGTGTCCGCCGTC-TCTATTTCCCGCCTCTTA-ATCAATTCTAAAAACTTCTCCACCA 601
Query 563 CCGC-ATCTC--CCTCCGTCGTC 582
|||| | | | |||||||||||
Sbjct 602 CCGCCACCACAACCTCCGTCGTC 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5