BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915752

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44540.1 | Symbols:  | Tapetum specific protein TAP35/TAP44 ...   518    2e-146


> AT5G44540.1 | Symbols:  | Tapetum specific protein TAP35/TAP44 
| chr5:17941287-17941646 REVERSE LENGTH=360
Length=360

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 335/361 (93%), Gaps = 5/361 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGAAAATCTCAAAGGCTTCTTCTCTCTGTTTACTCCTTCTCGTCTTCTTCCTCTTC  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGAAAATCTCAAAAGCTTCTTCTCTCTGTTTACTCCTTCTCGTCTTCTTCCTCTTC  60

Query  61   AGTTCCCGACCTGCATTCTCACTCCGTGGCCCAAAACTGCAATCA---GAACCAAAATTA  117
            ||||||| ||| ||| |||||||||||||||||||||| ||||||   |||||||||| |
Sbjct  61   AGTTCCCAACCCGCACTCTCACTCCGTGGCCCAAAACTTCAATCATCAGAACCAAAATCA  120

Query  118  GCTCAAACCCTAATGGATGATTCGTCTTCAATGAGCAAGATCGACTCTA-AAAGTGCAAA  176
            ||||||||||||||| || ||||||||||||||| ||||||| |||||  ||| ||||||
Sbjct  121  GCTCAAACCCTAATGAATAATTCGTCTTCAATGAACAAGATCAACTCTGGAAA-TGCAAA  179

Query  177  ATCCATGATTGCAGGATTCTTCAGTCACAAGTTTCCATTAAAGGGCTGGCCATTCCCAAA  236
            |||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct  180  ATCCATGATTGCTGGTTTCTTCAGTCACAAGTTTCCATTAAAGGGATGGCCTTTCCCTAA  239

Query  237  GTACCCACCTTTCACTATGGTTAACCCTAATATTCCAACAAACCCATCTGGAGCTCAAGA  296
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  240  GTACCCACCTTTCACTATGGTTAACCCTAATATTGCAACAAACCCATCTGGAGCGCAAGA  299

Query  297  GGAATCCGTAAAGTTACCTTCTTCCCCAAGCAAAGACAACAAAGATGGAGGAAACGCTTG  356
            |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  300  GGAATCCGCAAAGTTACCTTCTTCTCCAAGCAAAGACAACAAAGATGGACGAAACGCTTG  359

Query  357  A  357
            |
Sbjct  360  A  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5