BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915755
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44520.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 1282 0.0
> AT5G44520.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr5:17934287-17936527 REVERSE LENGTH=1300
Length=1300
Score = 1282 bits (694), Expect = 0.0
Identities = 813/870 (93%), Gaps = 9/870 (1%)
Strand=Plus/Plus
Query 1 ATGGTAATTGCGACAGCATCGACTCCAGTTTCACTCTCGTCGTCCGTGCTTTTCACGCGC 60
||||| | |||||||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 87 ATGGTTACTGCGACAGCATCAACTCCATTTTCACTCTCGTCGTCCGTGGTTTTCACGCGC 146
Query 61 CGTCGTAATTTCAAACGTTTTTCAGTACCTCGAGTAACCGCCAGTCTTTCTCCGGAGGTT 120
||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 147 CGTCGTAATTTCAAACGTTTTCCAGT---T----T--GCGCCAGTCTTTCTCCGGAGGTT 197
Query 121 TCTCCTCTTCTCCGAGCAGCTCACCACACCGTGGATAAATATGTAAAGAGTGGGATGATT 180
|||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 198 TCTCCTCTTCTCAGAGCAGCTCATCACACTGTGGATAATTATGTAAAGAGTGGGATGATT 257
Query 181 ATTGGTTTAGGATCTGGAGAAGCTTCAGATATGGCTATACGTTATTTGGGTCAGCAACTT 240
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 258 ATTGGTTTAGGATCTGGAGAAGCTTCAGATTTTGCTATACGTTATTTGGGTCAACAACTT 317
Query 241 CGTTCTGGTTCTTTACAAAATGTTGTTGGTGTACCAATGTCTGCTCAAAGCGCGAGTGAA 300
|||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 318 GGTTCTGGTTCTTTACATAATGTTGTTGGTGTACCAATGTCTGCTCGAAGTGCGAGTGAA 377
Query 301 GCAGCAAAGTCTGGAATCCCTTTGGAATATTTCCGGGATGGTTTTCAGATTGATTTTGCA 360
|||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 378 GCAGCAAAGTATGGAATCCCCTTGGAATATTACCGGGATGGTGTTCAGATTGATTTTGCA 437
Query 361 TTTCATGATGCTGATGCTGTAGAAGAGGGTACGCTTATTGCAGTTATTGGACGACGGAGA 420
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 438 TTTCATGATGCTGATGCTGTAGAAGAGAATACGCTTATTGCAGTTATTGGACGGCGGAGA 497
Query 421 AGTTCACAGGAAGATGATTATATTCTGAAACAAAAGTCTATTGTAAAAGCAGCTGATGAG 480
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 498 AGTTCACAGGAAGATGACTATATTCTGAAACAAAAGTCTATTGTAAAAGTAGCTGATGAG 557
Query 481 GCAGTCTTTATGATTAATGAAGAACAATACAAAGCCAGCCTTGAAGGTTCTATCCCTGTT 540
|||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||||
Sbjct 558 GCAGTCTTCATGATAAAGGAAGAACAATACAAAGCCGGTCTTGAAGGTTCTATCCCTGTT 617
Query 541 TTAGTTCAATCCCTTAATTGGTTGGCCATAGCTGAGGAGATAGATGACTTTTATTTAGGC 600
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 618 TTAGTTCAATCTCTTAATTGGTTGGCCATAGCTGAGGAGATAGATGACTTGTATCTAGGC 677
Query 601 GATGCAGAGGTTTGGAGAAGAGCTTCTGTAGAAAATGAAGGCCCTCTTGGAGGAAACTTT 660
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 678 GATGCAGAGGTGTGGAGAAGAGCTTCTGTTGAAAATGAAGGCCCTCTTGGAGGAGACTTT 737
Query 661 CCTATAGTTACCAGTGATGGTCACAATATTCTTGATGTTATATTTACAACTCCAATTCCA 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 738 CCTATAGTTACCAGTGATGGTCACAACATTCTTGATGTTATATTTACAACTCCGATTCGA 797
Query 721 AGCCTCGCTGCCGTGGCTACAAGCCTGGATAAGATTGATGGGGTTGTGGACCATGGACTA 780
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 798 AGCCTCGCTGACTTGGCTACAAGCCTTGATAAGATTGATGGGGTTGTGGACCATGGACTA 857
Query 781 ATTATCAAAACTCGATGCACGGTGTTGATCGCAGAAGAAACTGATGTAAGAAGTGTTACC 840
|||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||
Sbjct 858 ATTATCAAAACTCGATGCACGGTGGTGATTGCAGAAGAAACTGTTGTAAGAAGTGTTACC 917
Query 841 TTGCAGACCAGTGCAGTGGAGGGTGGTGTA 870
||||||||||||||| ||||||||||||||
Sbjct 918 TTGCAGACCAGTGCATTGGAGGGTGGTGTA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5