BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915758

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44500.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   121    3e-27


> AT5G44500.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr5:17927453-17929463 FORWARD LENGTH=1132
Length=1132

 Score =  121 bits (65),  Expect = 3e-27
 Identities = 67/68 (99%), Gaps = 0/68 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGCGAGTAACG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  53   ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGCGAGTAACA  112

Query  61   ATCCAAGA  68
            ||||||||
Sbjct  113  ATCCAAGA  120



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5