BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915759
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 442 1e-123
AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 429 9e-120
> AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:17926351-17926710 REVERSE LENGTH=360
Length=360
Score = 442 bits (239), Expect = 1e-123
Identities = 313/348 (90%), Gaps = 8/348 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58
|||||| | ||||||||||| || || || |||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58
Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACATGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177
|||||||||||||||||| |||||||||||||||||| | ||||| | || |||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177
Query 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCC 236
||||| |||| ||||||||||||||| |||||| || |||| |||||| || ||||| |
Sbjct 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236
Query 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296
Query 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
> AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr5:17944809-17945167 FORWARD
LENGTH=359
Length=359
Score = 429 bits (232), Expect = 9e-120
Identities = 327/371 (88%), Gaps = 14/371 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAACGTGATTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59
||||| |||||||||||||||||| || || || || ||||| ||||| ||||||||||
Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59
Query 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119
Query 120 CGGTGTACCAGGATTACATGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAG 178
| | || | ||| || ||||||||||||||| | |||| |||||||||||| |||
Sbjct 120 C-G-GT-----G--TAC-TGGTATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168
Query 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTG 238
||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||
Sbjct 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228
Query 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288
Query 299 CATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTA 358
|||||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| ||
Sbjct 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348
Query 359 CCAAAAAGTAG 369
| | |||||||
Sbjct 349 CGAGAAAGTAG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5