BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915760 Length=369 Score E Sequences producing significant alignments: (Bits) Value AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 442 1e-123 AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 429 9e-120 > AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein | chr5:17926351-17926710 REVERSE LENGTH=360 Length=360 Score = 442 bits (239), Expect = 1e-123 Identities = 312/347 (90%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58 |||||| | ||||||||||| || || | || |||||||||||||||||| |||||| || Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58 Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTC 118 |||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178 ||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178 Query 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCCT 237 |||| |||| ||||||||||||||| |||||| || |||| |||||| || ||||| | Sbjct 179 GGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCA 237 Query 238 GCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAAT 297 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| Sbjct 238 GCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAAT 297 Query 298 CCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344 || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 298 CCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344 > AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related family protein [pseudogene] | chr5:17944809-17945167 FORWARD LENGTH=359 Length=359 Score = 429 bits (232), Expect = 9e-120 Identities = 325/369 (88%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60 ||||| ||||||||||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 Query 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCC 120 ||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120 Query 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180 | || | || ||| ||||||||||||||| ||||| |||||||||||| ||||| Sbjct 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170 Query 181 TGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTGCT 240 ||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| | Sbjct 171 TGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGTT 230 Query 241 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCA 300 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct 231 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCCA 290 Query 301 TTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTACC 360 |||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| ||| Sbjct 291 TTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATACG 350 Query 361 AAAAAGTAG 369 | ||||||| Sbjct 351 AGAAAGTAG 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17342373405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5