BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915763
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 457 4e-128
AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 425 1e-118
> AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:17926351-17926710 REVERSE LENGTH=360
Length=360
Score = 457 bits (247), Expect = 4e-128
Identities = 317/350 (91%), Gaps = 8/350 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAATGTGAT-TT-TTCTCCTAGCGGTTTTATGCATTGCACTGTCTGCAA 58
|||||| | ||||| ||||| || || | ||||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177
||||||||||||||||||||||||||||||||||||| | ||||| | || |||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177
Query 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGTCC 236
||||| |||| ||||||||||||||| |||||| || |||| |||||| || |||||| |
Sbjct 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236
Query 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296
Query 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCG 346
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCG 346
> AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr5:17944809-17945167 FORWARD
LENGTH=359
Length=359
Score = 425 bits (230), Expect = 1e-118
Identities = 316/356 (89%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAATGTGATTTTTCTCCTAGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
||||| ||||||| ||||||||||| ||| || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
Query 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
Query 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAGG 179
| || | || ||| ||||||||||||||| | |||| |||||||||||| ||||
Sbjct 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAGG 169
Query 180 GTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGTCCTGC 239
|||||||||||||||||| ||||||||||||| ||||||||| || |||||||| ||||
Sbjct 170 GTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGT 229
Query 240 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCC 299
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 230 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCC 289
Query 300 ATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTC 355
||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||
Sbjct 290 ATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTC 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16739160417
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5