BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915764 Length=372 Score E Sequences producing significant alignments: (Bits) Value AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 388 1e-107 AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 359 1e-98 > AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein | chr5:17926351-17926710 REVERSE LENGTH=360 Length=360 Score = 388 bits (210), Expect = 1e-107 Identities = 315/365 (86%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58 |||||| | ||||||||||| || || | || |||||||||||||||||| |||||| || Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58 Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178 ||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178 Query 179 GGTGTATCGCAGAGTTTTGGCCGGTGGCAAATCCACTGCGCAA-GTTCGTAAACATAGGT 237 |||| |||| |||||||| || | || | | || | || ||||| || |||||| Sbjct 179 GGTGCATCGTAGAGTTTTCGCAA-TC-CATA-CT-CTTAGAAAAGTTCGGCAAGATAGGT 234 Query 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297 | |||||||||||||||||||||||||| ||||||||||| |||| |||||||| ||| Sbjct 235 TCAGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTC 294 Query 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCA-CTTCC 356 ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | | ||| Sbjct 295 AATCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCC 354 Query 357 TCCTA 361 | ||| Sbjct 355 TACTA 359 > AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related family protein [pseudogene] | chr5:17944809-17945167 FORWARD LENGTH=359 Length=359 Score = 359 bits (194), Expect = 1e-98 Identities = 318/375 (85%), Gaps = 19/375 (5%) Strand=Plus/Plus Query 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60 ||||| ||||||||||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 Query 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120 Query 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180 | || | || ||| ||||||||||||||| ||||| |||||||||||| ||||| Sbjct 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170 Query 181 TGTATCGCAGAGTTTTGGC-CGGTGGCAAAT-C-CACTGCGCAAGTTCGTAAACATAGGT 237 |||||||||||||||| | | | | || | ||||| | ||||| | |||||||| Sbjct 171 TGTATCGCAGAGTTTT--CACAAT--C-TATACTCACTG-GAAAGTTTGGCAACATAGGC 224 Query 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297 |||| ||||||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct 225 CCTGTTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTC 284 Query 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCACTTCCT 357 |||||||||||||||||| |||| |||||||| ||||||||||| ||||||||| || || Sbjct 285 AATCCATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCT 344 Query 358 CCTACCAAAAAGTAG 372 | ||| | ||||||| Sbjct 345 CATACGAGAAAGTAG 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17493176652 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5