BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915764
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 388 1e-107
AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 359 1e-98
> AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:17926351-17926710 REVERSE LENGTH=360
Length=360
Score = 388 bits (210), Expect = 1e-107
Identities = 315/365 (86%), Gaps = 10/365 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58
|||||| | ||||||||||| || || | || |||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178
||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178
Query 179 GGTGTATCGCAGAGTTTTGGCCGGTGGCAAATCCACTGCGCAA-GTTCGTAAACATAGGT 237
|||| |||| |||||||| || | || | | || | || ||||| || ||||||
Sbjct 179 GGTGCATCGTAGAGTTTTCGCAA-TC-CATA-CT-CTTAGAAAAGTTCGGCAAGATAGGT 234
Query 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297
| |||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct 235 TCAGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTC 294
Query 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCA-CTTCC 356
||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | | |||
Sbjct 295 AATCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCC 354
Query 357 TCCTA 361
| |||
Sbjct 355 TACTA 359
> AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr5:17944809-17945167 FORWARD
LENGTH=359
Length=359
Score = 359 bits (194), Expect = 1e-98
Identities = 318/375 (85%), Gaps = 19/375 (5%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
||||| ||||||||||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
Query 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
Query 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180
| || | || ||| ||||||||||||||| ||||| |||||||||||| |||||
Sbjct 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170
Query 181 TGTATCGCAGAGTTTTGGC-CGGTGGCAAAT-C-CACTGCGCAAGTTCGTAAACATAGGT 237
|||||||||||||||| | | | | || | ||||| | ||||| | ||||||||
Sbjct 171 TGTATCGCAGAGTTTT--CACAAT--C-TATACTCACTG-GAAAGTTTGGCAACATAGGC 224
Query 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297
|||| ||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 225 CCTGTTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTC 284
Query 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCACTTCCT 357
|||||||||||||||||| |||| |||||||| ||||||||||| ||||||||| || ||
Sbjct 285 AATCCATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCT 344
Query 358 CCTACCAAAAAGTAG 372
| ||| | |||||||
Sbjct 345 CATACGAGAAAGTAG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17493176652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5