BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915765

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44490.1 | Symbols:  | FBD, F-box, Skp2-like and Leucine Ric...   481    5e-135
  AT5G22680.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   211    7e-54 


> AT5G44490.1 | Symbols:  | FBD, F-box, Skp2-like and Leucine Rich 
Repeat domains containing protein | chr5:17924035-17925843 
FORWARD LENGTH=1368
Length=1368

 Score =  481 bits (260),  Expect = 5e-135
 Identities = 321/350 (92%), Gaps = 6/350 (2%)
 Strand=Plus/Plus

Query  1    ATAGAGAATTCATGTTTGCACAAGCTTAAGCTAAGTATTCGTAAGAAAG-AAGAGAATGA  59
            ||||||||||||||||||||||||||||||||||||||||| |||  || | ||||||||
Sbjct  253  ATAGAGAATTCATGTTTGCACAAGCTTAAGCTAAGTATTCGGAAG-GAGCATGAGAATGA  311

Query  60   TAACAAGTCTTGTGTCACGCGTTGGATAGATTTTGTGGCTA-AGAGTAAACTTCAGCATC  118
            ||||||||||||||||||||| ||||| | |||||||||||   | ||||||| ||||||
Sbjct  312  TAACAAGTCTTGTGTCACGCGATGGATTGGTTTTGTGGCTACCCA-TAAACTTAAGCATC  370

Query  119  TTGATGTTGAGTGTCTTCTTTGGAAGAGTGAGAGTTTGGAAGTGATGCCATTAAGCCTCT  178
            |||||||||||||||||||||||||||   || ||||||||||||||||||||| |||||
Sbjct  371  TTGATGTTGAGTGTCTTCTTTGGAAGAAAAAGTGTTTGGAAGTGATGCCATTAACCCTCT  430

Query  179  ATATTAGTAAGACGCTTCTTTACTTAAGACTCCAT-GGAGTAATGTTAGGTAATGTTGAG  237
            |||||| | |||||||| ||||||||||||||||| || ||| |||| ||||||||||||
Sbjct  431  ATATTACTCAGACGCTTTTTTACTTAAGACTCCATCGG-GTATTGTTGGGTAATGTTGAG  489

Query  238  TCTATTTCATTACCTTGTCTCAAGACTATGCATTTAGAGCAAAATGTTTATGCTAATGAG  297
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  490  TCTATTTCATTACCTTGTCTCAAGACTATGCATTTAGAACAAAATGTTTATGCCAATGAG  549

Query  298  ACGTGTCTAGAGTTCCTTATCTCATCTTGCCCTGTTCTTGAAGATTTGAG  347
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  550  ACGTGTCTAGAGTTCTTTATCTCATCTTGCCCTGTTCTTGAAGATCTGAG  599


 Score =  267 bits (144),  Expect = 2e-70
 Identities = 220/255 (86%), Gaps = 11/255 (4%)
 Strand=Plus/Plus

Query  437  AGCATCGTAGAGGGATTCTTGGGT-TTAATAGCTTAGACTCTGGAGTTTTGATTGATGCA  495
            |||| ||||||||  ||| ||||| || |||||||||||| |||||||||||||||||||
Sbjct  611  AGCACCGTAGAGGCTTTCATGGGTATT-ATAGCTTAGACTTTGGAGTTTTGATTGATGCA  669

Query  496  CCTAGACTCAAGTATTTGAAGTTCAGAAATGAAT-TATCGCGGAGTAAAATCGTAAGTAA  554
            |||||||| || ||||||||| || || ||| || |||||||||||||||||||||| ||
Sbjct  670  CCTAGACTAAAATATTTGAAGATCGGAGATG-ATATATCGCGGAGTAAAATCGTAAGCAA  728

Query  555  TTTGGATTCCTTAGCCAAGGTTGAAATTGTTGGCCTCTTTGCTATTG-GCAAAC-CATCA  612
            | ||||||||||||||||| ||||||||||||||||||||  |||||  |   |   |||
Sbjct  729  TATGGATTCCTTAGCCAAGATTGAAATTGTTGGCCTCTTTTATATTGAACGTGCTTTTCA  788

Query  613  -AACCAA-GTGGCCCGTAACTTTTTCATCGGTATCTCGAGAGTTAAAGATATGATTATCT  670
             || ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct  789  TAA-CAAGGTGGCCCGTAACTTTTTCATCGGTATCTCCAGAGTTAGAGATATGATCATCT  847

Query  671  CTGAC-GTTGCTATG  684
            ||||| || ||||||
Sbjct  848  CTGACCGT-GCTATG  861


> AT5G22680.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: F-box/RNI-like superfamily protein (TAIR:AT5G22720.2); 
Has 65 Blast hits to 64 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:7540041-7540748 
REVERSE LENGTH=708
Length=708

 Score =  211 bits (114),  Expect = 7e-54
 Identities = 202/242 (83%), Gaps = 15/242 (6%)
 Strand=Plus/Plus

Query  28   AAGCTAAGTATTCGTAAGAAAGAAGAGAATGATAACAAGTCTTGTGTCACGCGTTGGATA  87
            ||||||||||||| | | || || | |||||   ||||||||||||||||||||||||||
Sbjct  211  AAGCTAAGTATTC-T-A-AAGGATGTGAATG---ACAAGTCTTGTGTCACGCGTTGGATA  264

Query  88   GATTTTGTGGCTAAGAGTAAACTTCAGCATCTTGATGTTGAGTGTCTTCTT-TGGAAGAG  146
            ||||||||||||| |  ||||||| || ||||||||||||||| |  || | || ||| |
Sbjct  265  GATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGTTTGGTCCTCTG-AAGCG  323

Query  147  TGAGAGTTTGGAAGTGATGCCAT-TAAGCCTCTATAT-TAGTAAGACGCTTCTTTACTTA  204
            |||| |||||||||||||||| | ||||||||||||| | || |||| || |||||||||
Sbjct  324  TGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCT-GTCAGACACTCCTTTACTTA  381

Query  205  AGACTCCATGGAGTAATGTTAGGTAATGTT-GAGTCTATTTCATTACCTTGTCTCAAGAC  263
            ||||||||| | ||| |||| |||| | || |||| | ||||||||||| |||||| |||
Sbjct  382  AGACTCCATCG-GTATTGTTTGGTAGT-TTCGAGTTTGTTTCATTACCTCGTCTCAGGAC  439

Query  264  TA  265
            ||
Sbjct  440  TA  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37926780985


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5