BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915766
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44480.1 | Symbols: DUR | NAD(P)-binding Rossmann-fold super... 1853 0.0
> AT5G44480.1 | Symbols: DUR | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:17921515-17923643 FORWARD LENGTH=1311
Length=1311
Score = 1853 bits (1003), Expect = 0.0
Identities = 1121/1180 (95%), Gaps = 0/1180 (0%)
Strand=Plus/Plus
Query 60 AGAAATGGATTGCTTAGAACCGAAAACAAAGAACAATCTCACTGGAAAGCTTCTCTTAGT 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGAAATGGATTGCTTAGAACCCAAAACAAAGAACAATCTCACTGGAAAGCTTCTCTTAGT 191
Query 120 AGCTTCTCTCCTAATCTTAGCCGTTATTGTGATCAGTCAATCTTCAAGTTTTACATCTCC 179
|||||| ||| |||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 192 AGCTTCACTCTTAATTTTAGCCATTATTGTGATCAGTCAATCTTCAAGTTTCACATCTCC 251
Query 180 AAGCGCGTTTTCTCGAAGAGAGGAAGGAGTGACTCATGTGCTAGTCACTGGTGGTGCTGG 239
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 252 AAGCGCGTTTTCTCAAAGAGAGGAAGGAGTGACTCATGTGTTAGTCACTGGTGGTGCTGG 311
Query 240 TTATATCGGGTCACATGCTGCTTTAAGACTTCTTAGAGATTCATACCGCGTAACCATTGT 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TTATATCGGGTCACATGCGGCTTTAAGACTTCTTAGAGATTCATACCGCGTAACCATTGT 371
Query 300 GGACAATCTTTCGCGTGGGAATCTTGGTGCGGTTAAGACTTTACAGCGATTATTTCCGCA 359
|||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct 372 GGACAATCTTTCGCGTGGAAATCTTGGTGCGGTTAAGACTTTACAGCAATTATTCCCGCA 431
Query 360 AACGGGAAGACTTCAATTCATTTATGCTGACTTAGGAGATCCCATAGCGGTCGAGAAAAT 419
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 432 GACAGGAAGACTTCAGTTCATTTATGCTGACTTAGGAGATCCCTTAGCGGTCGAGAAAAT 491
Query 420 CTTCTCCGAGAACGCTTTTGACGCTGTGATGCATTTTGCTGCGGTAGCTTATGTTGGAGA 479
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 492 CTTCTCGGAGAATGCTTTTGACGCTGTAATGCATTTTGCTGCGGTAGCTTATGTCGGAGA 551
Query 480 AAGCACTCTTTATCCTCTTAAATATTACCATAACATTACATCAAACACATTAGGAGTTCT 539
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 552 AAGCACTCTTTATCCTCTAAAATATTACCATAACATTACATCAAACACGTTAGGAGTTCT 611
Query 540 TGAAGCTATGGCTAGACATAAAGTGAAGAAATTGATATATTCTAGCACTTGTGCTACATA 599
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 612 TGAAGCTATGGCTAGACATAAAGTAAAGAAACTGATATATTCTAGCACTTGTGCTACATA 671
Query 600 TGGAGAGCCTGAAAAAATGCCGATTACCGAAGATACTCCGCAGGTCCCGATTAACCCTTA 659
||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || ||
Sbjct 672 TGGAGAGCCTGAAAAAATGCCGATTACTGAAGACACTCCACAGGTACCGATTAATCCATA 731
Query 660 CGGAAAAGCCAAAAAGATGGCAGAGGATATGATCTTGGATTTCTCTAAGAACTCTGACAT 719
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 732 CGGAAAAGCTAAAAAGATGGCAGAGGATATGATCTTGGATTTCTCAAAGAACTCTGACAT 791
Query 720 GGCGGTTATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCAGGAGGTAGATTAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GGCGGTTATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCAGGAGGTAGATTAGG 851
Query 780 AGAAGCTCCAAGACCCGAGCTTCGCGAGCAAGGACGGATTTCTGGTGCTTGTTTCGATGC 839
|||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 852 AGAAGCGCCAAGACCCGAACTTCGTGAGCAAGGAAGGATTTCTGGTGCTTGTTTCGATGC 911
Query 840 AGCTCGTGGTTTCATTCCTGGATTACAAGTAAAAGGAACAGATTACAAAACATCGGATGG 899
|||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||
Sbjct 912 AGCTCGTGGTTTCATTCCCGGACTACAAGTGAAAGGAACGGATTACAAAACATCGGACGG 971
Query 900 TACTTGCATTAGAGATTATATAGATGTTACTGATCTCGTGGATGCTCACGTGAAGGCTCT 959
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 972 TACTTGCATTAGAGACTATATAGATGTTACTGACCTCGTGGATGCTCACGTGAAGGCTCT 1031
Query 960 CGTGAAAGCTCAGCCTCGAAAAGTCGGTATCTACAATGTTGGAACCGGAAAAGGAAGATC 1019
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1032 CGAGAAAGCTCAGCCTCGAAAAGTCGGTATCTACAATGTTGGAACCGGAAAAGGGAGATC 1091
Query 1020 GGTTAAAGAATTCGTGGAGGCATGTAAGAAGGCAACAGGAGTTGAGATCAAAGTAGATTT 1079
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1092 GGTTAAAGAATTCGTTGAGGCATGTAAGAAGGCGACAGGAGTTGAGATCAAAGTAGATTT 1151
Query 1080 CTTGCCTCGAAGACCGGGAGATTACGCAGAAGTGTATAGTGACCCGACAAAGATTTTGAA 1139
|||||||||| ||||||||||||||||||| || || ||||| || ||||||||||||||
Sbjct 1152 CTTGCCTCGACGACCGGGAGATTACGCAGAGGTTTACAGTGATCCAACAAAGATTTTGAA 1211
Query 1140 AGAATTGAATTGGACTGCTCGATTTACTAATCTTCAAGATAGTCTTCAAGTTGCTTGGAG 1199
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1212 AGATTTGAATTGGACTGCTCGATTCACTAATCTTCAAGATAGTCTTCAAGTTGCTTGGAG 1271
Query 1200 GTGGCAAAAGATTCATCCTCATGGATATGCTTCTTATTAA 1239
|||||||| |||||||||||||||||| ||||||||||
Sbjct 1272 ATGGCAAAAAATTCATCCTCATGGATATAATTCTTATTAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5