BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915783
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1810 0.0
AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TP... 355 6e-97
> AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:17857325-17859056 FORWARD LENGTH=1410
Length=1410
Score = 1810 bits (980), Expect = 0.0
Identities = 1272/1409 (90%), Gaps = 35/1409 (2%)
Strand=Plus/Plus
Query 1 ATGTGGCGTCGCGAGAGCCGTGATGCTACGGGAGGAGGTTTCTTGACTCCACCACCGTCA 60
||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGCGGCGTCGTGAGAGCCGTGGTGCTAAGGGAGGAGGTTTCTTGACTCCACCACCGTCA 60
Query 61 TGGAACACGACGAGAAGAGTTTACGTTGCGATGCCGATGTCAGAGAGAAAAAGATCATCT 120
||| |||||||||||||||||||| ||||||||||||| || ||||| ||||||||| ||
Sbjct 61 TGGCACACGACGAGAAGAGTTTACATTGCGATGCCGATTTCGGAGAGGAAAAGATCACCT 120
Query 121 TTGATCAAGAATCAAGAATCGTTTAGGGTTCCTACTGGTGATTCTCCTTACGTCAGAGCC 180
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTGATCGAGAATCAAGAATCGTTTAGGGTTCGTACTGGTGATTCTCCTTACGTCAGAGCC 180
Query 181 AAACATGCTCAGTTGGTTTCTAAAGATCCGGATCGAGCAATCTCGTTGTTTTGGGCTGCG 240
|||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct 181 AAACATGCTCAGTTGGTTTCTAAAGACCCGAATCGAGCTATCTCGTTGTTTTGGGCGGCG 240
Query 241 GTTAATGCTGGAGATAGAGTTGATAGTGCATTGAAGAATATGGTAGTTGTTCTGAAACAT 300
||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||
Sbjct 241 ATTAATGCTGGAGATAGAGTTGATAGTGCATTGAAGGACATGGTAGTTGTTTTAAAACAG 300
Query 301 TTAGA-CCGATCCGATGAAGGAATCGAAGCTATCAAATCTTTTCGATATCTCTGTCCTTT 359
|| || ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 301 TT-GAACCGATTCGATGAAGGAATCGAAGCTATCAAGTCTTTTCGATATCTCTGCCCTTT 359
Query 360 TGAATCTCAAGATTCTATTGATAACTTGTTACTTGAACTCTACAAGAAGTCAGGGAGGAT 419
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 360 TGAATCTCAAGATTCTATTGATAACTTGTTACTTGAACTCTACATGAAGTCTGGGAGGAT 419
Query 420 TACAGAGGAAGCTGAGCTACTTGAACACAAACTGAGAACACTTGAACATGACACGCACTA 479
|||||||| |||||||| ||||||||||||||||||||||||||||| |||| || ||
Sbjct 420 TACAGAGGTCGCTGAGCTGCTTGAACACAAACTGAGAACACTTGAACAAGACAAACATTA 479
Query 480 TGGTGGCAGGATGAAAATAGCGAAAAGAAGCCACGGGGAGCAGAACAACATGACTATCGA 539
|||||||||||| |||||||||||||||||||| | ||||||||| |||| ||| |||||
Sbjct 480 TGGTGGCAGGATCAAAATAGCGAAAAGAAGCCATGAGGAGCAGAATAACAAGACAATCGA 539
Query 540 GCAAGAGAAAGCGCAGATTCTAGGGAACTTAGCTTGGGTTCACTTACAGCTTCATAACTA 599
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCAAGAGAAAGCACGGATTCTAGGGAACTTAGCTTGGGTTCACTTACAGCTTCATAACTA 599
Query 600 TGGAATCGCAGAGCAGTATTACAGGAATGCTTTGTCTTTGGAGCCTGACAATAACAAGTT 659
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TGGAATTGCAGAGCAGTATTACAGGAATGCTTTGTCTTTGGAACCTGACAATAACAAGTT 659
Query 660 GTGCAATCTTGCGATCTGTTTAATGCGTATGGATAGAATCCCG-GAAGCTAAACCTCTGC 718
|||||||||||| |||||||| || |||||||| |||| ||| ||||||||| ||||||
Sbjct 660 GTGCAATCTTGCAATCTGTTTGATACGTATGGAAAGAA-CCCATGAAGCTAAATCTCTGC 718
Query 719 TTGAGGATGTAAGACAGTCTCTAGGAAATCAATGGAAGGGA-GAACCGTTTCGAAACTCT 777
|||||||||||| |||||||||||| |||||||||||| | ||||||||| | || |||
Sbjct 719 TTGAGGATGTAAAACAGTCTCTAGGGAATCAATGGAAGA-ATGAACCGTTTTGCAAGTCT 777
Query 778 TTTGAACGGGCTACTGAGATGTTAGCAGAAAGAGAACGAGCAACAGTAGCGGATAAACCA 837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 TTTGAACGGGCTACTGAGATGTTAGCAGAAAGAGAACAAGCAACAGTAGCGGATAAACCA 837
Query 838 GAAGATTTGTTGACAAGTAGCTCTTCAGATAACTTCTCTTCGAGGTGTTCAAGG-GGGAT 896
||||||||| |||||||||||| ||||||||||||||||||||| |||||| || |||||
Sbjct 838 GAAGATTTGCTGACAAGTAGCTTTTCAGATAACTTCTCTTCGAGATGTTCA-GGTGGGAT 896
Query 897 GAAAGGAAACAAGGCTCTAGTTGGAACTAGCACTGAACTGGGTAACATTTACAAGACGAG 956
||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||| |
Sbjct 897 GAAAGGAAAGAAGGCTCTAGCTGGAACTAGCACTGAACTGGGTAATATTCACAAGACAAA 956
Query 957 CTCGCATGTTTCCTCTGAATCGGTTGAACAAAACTCGCCATATCTGATTACACAACCCCG 1016
|||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 957 CTCGCATGCTTCCTCTGAATCGGTTGAACAAAACTCACCAGGTCTGACTACACAACCCCG 1016
Query 1017 AGAATGTAAATGGGGAGATGAGGAAGTAAATCAGAATAAATGGGATGCAACAATTGGTGC 1076
||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 1017 GGAATGTAAATGGGTAGATGAGGAAGTAGATCAGAGTAAATGGGATGCGACAATTGGTGC 1076
Query 1077 TACTCGAAGGCTGAGGTTCGGGACAGTTGGTCCTGCTCGAAGGCTAAGGTTCGGGAATCA 1136
| |||||| ||| |||||| ||||||||||||||| ||| || ||||| ||||| ||| |
Sbjct 1077 TTCTCGAAAGCTCAGGTTCTGGACAGTTGGTCCTGTTCGTAGTCTAAGATTCGGTAATGA 1136
Query 1137 TTATCAGAAGAACTTGAAGAGTGTAGGAACATCAGCTTCGACTACTAATGGGAAGAAATT 1196
||||||||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct 1137 TTATCAGAAGAACTTGAAGAGTGTAGGAACAGCAGCCTCGACTACTAATG--A------- 1187
Query 1197 GGGTCAGAATTTGACTGACGAACTCCATCAATTCATCAGTAGTGATGCAGATTGCGTGAC 1256
| ||| ||| | | || | | |||||||||||||||||||||||| ||||
Sbjct 1188 ----C-GAA-----CTG-C-A--TC-A--A-TTCATCAGTAGTGATGCAGATTGCATGAC 1229
Query 1257 AAGCAAAGCAAGGAAGTTGTGTGCAGATTTAATCAAAGAAAAGGAAGATAACGAAAAAGT 1316
|||||||||||||||| ||||| |||| || |||||||| |||||||||||||||||||
Sbjct 1230 AAGCAAAGCAAGGAAGCTGTGTCCAGAATTGATCAAAGATAAGGAAGATAACGAAAAAGA 1289
Query 1317 AAGTGAAAGAATTGCTTCAGAATCTTCTACAGCTTACGCTAAGACCATGGACATTGGTGA 1376
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |
Sbjct 1290 AAGTGAAAGAATTGCTTCAGAATCTTCTTCAGCTTACGCTAAGATCACAGACATTGGTCA 1349
Query 1377 AAGAAAGGTTCTTCACATTGGTCGAAGAA 1405
|||||||||||||||||||| || |||||
Sbjct 1350 AAGAAAGGTTCTTCACATTGATCAAAGAA 1378
> AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11184103-11185844 REVERSE
LENGTH=1353
Length=1353
Score = 355 bits (192), Expect = 6e-97
Identities = 393/488 (81%), Gaps = 22/488 (5%)
Strand=Plus/Plus
Query 148 GTTCCTACTGGTGATTCTCCTTACGTCAGAGCCAAACATGCTCAGTTGGTTTCTAAAGAT 207
|||||| ||||||||||||||||||||||||||||||| || |||||| | |||||||
Sbjct 169 GTTCCTTCTGGTGATTCTCCTTACGTCAGAGCCAAACACGCGCAGTTGATAGATAAAGAT 228
Query 208 CCGGATC-GAGCAATCTCGTTGTTTTGGGCTGCGGTTAATGCTGGAGATAGAGTTGATAG 266
||| | | |||| || || ||||||||| |||| | || ||||||||| ||||||||||
Sbjct 229 CCGAA-CAGAGCTATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAG 287
Query 267 TGCATTGAAGAATATGGTAGTTGTTCTGAAACATTTAGACCGATCCGATGAAGGAATCGA 326
||| |||||| |||||| ||||| ||||||| |||| ||||| |||||||| || ||
Sbjct 288 TGCTTTGAAGGATATGGCCGTTGTAATGAAACAATTAGGTCGATCTGATGAAGGGATTGA 347
Query 327 AGCTATCAAATCTTTTCGATATCTCTGTCCTTTTGAATCTCAAGATTCTATTGATAACTT 386
|||||| ||||| ||||| ||||||||| |||| || |||||||| || |||||||||||
Sbjct 348 AGCTATTAAATCCTTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCGATTGATAACTT 407
Query 387 GTTACTTGAACTCTACAAGAAGTCAGGGAGGATT-ACAGAGGAAGCTGAGCTACTTGAAC 445
| |||| || |||||||||||||||||||| ||| | ||| ||||||| ||||||| |
Sbjct 408 GCTACTCGAGCTCTACAAGAAGTCAGGGAGAATTGA-AGAAGAAGCTGTTTTACTTGAGC 466
Query 446 ACAAACTG-AGAACACTTGAACATG-ACACGC-ACTATGGTGGCAG-GATGAAAATAGCG 501
|||||||| | |||||| ||||| | | | | | | |||||| || | | | | |||
Sbjct 467 ACAAACTGCA-AACACTCGAACAAGGA-ATGGGATT-TGGTGGTAGAG-TCAGTAGAGCA 522
Query 502 AAAAGAAGC-CACGGGGAGCA-GAACAACATGACTATCGAGCAAGAGAAAGCGCAG-ATT 558
||||| | || || | || | | ||||||||||||||||||||||| || ||
Sbjct 523 AAAAGG-GTTCAAGGAAAACATGTT-ATTATGACTATCGAGCAAGAGAAAGCA-AGGATA 579
Query 559 CTAGGGAACTTAG-CTTGGGTTCACTTACAGCTT-CATAACTATGGAATCGCAGAGCAGT 616
||||||||||| | || ||||||| |||||| || |||||||||||||| |||||||||
Sbjct 580 CTAGGGAACTTGGGCT-GGGTTCATTTACAG-TTACATAACTATGGAATTGCAGAGCAGC 637
Query 617 ATTACAGG 624
||||||||
Sbjct 638 ATTACAGG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5