BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915788
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01410.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 335 4e-91
AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-bin... 261 7e-69
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | ... 255 3e-67
> AT4G01410.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:578165-579169
FORWARD LENGTH=1005
Length=1005
Score = 335 bits (181), Expect = 4e-91
Identities = 222/241 (92%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 496 GGAGGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCT 555
|||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||
Sbjct 591 GGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCT 650
Query 556 TACGGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCG 615
||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 651 TACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCG 710
Query 616 ATTAAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCA 675
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 711 ATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCA 770
Query 676 TCT-CTTAATGGACAAGTTCCTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTA 734
||| || || ||||||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 771 TCTTCT-AACGGACAAGTTCCTC-T-T-CTCGCTCCTTCAACTTGTAAAGTTGATGTCTA 826
Query 735 G 735
|
Sbjct 827 G 827
> AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-binding
family protein | chr2:14527736-14529492 REVERSE LENGTH=685
Length=685
Score = 261 bits (141), Expect = 7e-69
Identities = 173/187 (93%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 195 TCGTGCAGCGGAGGCTCTAGTCGGTAAGAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGG 254
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 84 TCGTGCAGCGGAGGCTCTAGTC-G---GAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGG 139
Query 255 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGCGAAAGCCAAAGTCAAGCCCGAA 314
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 140 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAA 199
Query 315 GAAGAAGAAACCCGTTAAACTCCATTCAAAGATGCCCAAGAAACCTCCCACTGCTTTCTT 374
|||||| | |||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 200 GAAGAA-A--CCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTT 256
Query 375 CTTTTTC 381
|||||||
Sbjct 257 CTTTTTC 263
> AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6
| chr4:906079-912930 FORWARD LENGTH=3975
Length=3975
Score = 255 bits (138), Expect = 3e-67
Identities = 170/185 (92%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCATCTTGTCGACAGATCAGCGAAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
|||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
Query 61 ATCACCTCCTTCTTTGGGAAATATGCTTCCT--T-TTCTTCTCCATCTCCATCACCTTCA 117
|||||||||||||||||||||| |||||| | | ||||||||| |||||||| ||||||
Sbjct 61 ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA 120
Query 118 CCACCTCTGTCCAATAAGAAAACCCCCAAATCTATCAACCCTAACCCTAATTCTCCGTCT 177
||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT 180
Query 178 CCGTC 182
|||||
Sbjct 181 CCGTC 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5