BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915793

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51610.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   372    1e-102


> AT3G51610.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress; 
LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast 
hits to 53 proteins in 21 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other 
Eukaryotes - 5 (source: NCBI BLink). | chr3:19139552-19142085 
REVERSE LENGTH=955
Length=955

 Score =  372 bits (201),  Expect = 1e-102
 Identities = 234/250 (94%), Gaps = 2/250 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAGTCCTGGCTGCGGTGGCAGGATCACGACCGTGGAATGCTTTTATTCAAGCTTTA  60
            ||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct  100  ATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAACGCTTTTATTCAAGCTCTA  159

Query  61   TTTCTGATATCTCTATCATTTCCCATTCCCTCCAGCGCTTACCGACCTGGAGATATCGTC  120
             ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  160  GTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTACCGACCTGGAGATATCGTC  219

Query  121  CGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAATC-ACTTGGCATGATGTGATCGG  179
            |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct  220  CGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAA-CGACTTGGCATGATGTGATCGG  278

Query  180  AAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTTTTGATCCCCATAGCGAAACCAAT  239
            ||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct  279  AAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGATCCCAATAGCGAAACCAAT  338

Query  240  TGGCTACACA  249
            ||||||||||
Sbjct  339  TGGCTACACA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5