BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915796
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:178358... 1666 0.0
AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944572-947483 FO... 547 1e-154
> AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:17835849-17839254
REVERSE LENGTH=1984
Length=1984
Score = 1666 bits (902), Expect = 0.0
Identities = 1014/1068 (95%), Gaps = 7/1068 (1%)
Strand=Plus/Plus
Query 489 GAACAATGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGA 548
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAATAACGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGA 712
Query 549 -CCCAAAGTTTGATGCTCTTATTGCAGCTTTATTCACAAATATTTATAGTTATGAGGAAG 607
|| ||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 713 TCCGAAA-TTTGATGCTCTTATTGCTGCTTTATTTACAAATATTGATAGTTATGAGGAAG 771
Query 608 AGGAACTGGCTTTTCACGAAGATGAAATGGCTCGTAATAAGCAGATTCAAGCATCTATAG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGGAACTGGCTTTTCACGAAGATGAAATGGCTCGTAATAAGCAGATTCAAGCATCTATAG 831
Query 668 CTCAAATATCGCAACGACAATCTGAGGCTCTTGTGAAAAGACGATCT-TTGGGTAAAGAG 726
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 832 CTCAGATATCGCAACGACAATCTGAGGCTCTTGTGAAAAGACGATCTCTT-GGTAAAGAG 890
Query 727 GCAGCCGTCTTAATGAGATCACCGCGTATTGCTAGTAGCTCCAGAAGGAGACGGAACTGC 786
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 891 GCAGCAGTCTTAATGAGATCACCGCGTATTGCTAGTGGCTCCAGAAGGAGACGGAACAGC 950
Query 787 AGAAACATGGAACAACAAAACGCATCAGAAGCCCATGACGATGATAATAATGATGATAAT 846
|||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 951 AGAAACATGGAACAACAAAACGCATCAGAAGCTCATGAAGATGATGATAATGATGATAAT 1010
Query 847 AACAACAGAGGAGGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAG 906
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AACAACAGAGGAAGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAG 1070
Query 907 AAGAAACGTAGAAAACGGTCTACAAGTCGTTCAACACAACACCCTTCTTCTTCTGGTGCA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1071 AAGAAACGTAGAAAACGGTCTACAAGTCGTTCAACACAACACCCTTCTTCTTCAGGTGCA 1130
Query 967 AACAAAAACAATGGTAACTGTGCAGATAATGACACAGAAGTGTATAGAGACAGCAAAGGA 1026
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1131 AACAAAAACAATGGTAACTGTGCAGATAACGACACAGAAGTGTATAGAGACACCAAAGGC 1190
Query 1027 ATATCTCCCGGGCTTGTGTGGAATCAAGAGATACTGGCTTGGGGAAGAGGCGGGACAAGG 1086
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1191 ATATCTCCCGGGCTTGTGTGGAATCCCGAGATACTGGCTTGGGGAAGAGGCGGGACAAGG 1250
Query 1087 AGTAACACAAGACATGGGAATAGTACTTCAGGAGGTAGTAGTAAGAGTGTGAGGAATGCT 1146
||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 1251 AGTAACACAAGGCATGGGAATAATACTTCTGGAGGTAGTAGTAAGAGTGTAAGGAATGCC 1310
Query 1147 CGTGTGAACAAGCTTGTTGAATACCTACGTAGCAGCATAGATGGATCTAGCGTTGAGTTA 1206
||||||||||| ||||||||||| ||||| |||||| ||||||||||||| ||||||||
Sbjct 1311 CGTGTGAACAAACTTGTTGAATATCTACGCAGCAGCGTAGATGGATCTAGTGTTGAGTTG 1370
Query 1207 GATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCACAGCCA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCACAGCCA 1430
Query 1267 TATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAATTCGTAGCACTTCAG 1326
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1431 TATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAATTCGTTGCACTTCAG 1490
Query 1327 ATGCATTTGAAGACTGAAGAGGTTGAATTGTTGGCAACAAGAAGA-G-G-AGGAGAAGAT 1383
|| ||||||||||||||||||||||||||||| | |||||||||| | | ||||||||||
Sbjct 1491 ATACATTTGAAGACTGAAGAGGTTGAATTGTTAGTAACAAGAAGAAGAGTAGGAGAAGAT 1550
Query 1384 ATGGCAATAGAGAATCTTCCTGTAGTGACTCCAGCTTCAGCAGCAACATCCAAAGATGAG 1443
|||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 1551 GCGGCAATAGAGAATCTTCCTGCAGTGACTCCAGCTTCAGCAGCAGCATCTAAAGATGAG 1610
Query 1444 ATGCAAAGTCTGGAAGACAATGAAACATTTTCAAGGCTCAAAGTCGATTTCATTTCAAGC 1503
|||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1611 ATGCTGAGTTTGGAAGACAATGAAACATTGTCAAGGCTCAAAATCGATTTCATTTCAAGC 1670
Query 1504 CATGAACAACATTTGATCATAGCTTATCGGAAGAAGCAAACCGAGTGA 1551
|||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1671 CATGAACAACATTTGATCATAGCTTACCGGAAGAAGCAAACTGAGTGA 1718
Score = 396 bits (214), Expect = 4e-109
Identities = 350/411 (85%), Gaps = 28/411 (7%)
Strand=Plus/Plus
Query 16 AGCTTCTCGTCGGCTGAGATTCCCGATGTGGCAGACCAACCACGCGACCGATTTAACCC- 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 AGCTTCTCGTCGGCTGAGATTCCCGATGTGGCAGACCAACCACGCGACCGATTTAACCCC 218
Query 75 GCAAGCTGA-ACAGGATCCACAAGACAAGGCTgagaagaaagaag-ga--gacg-a--tg 127
| ||||| | |||||||| |||||| |||| ||||| |||||||| || || | | ||
Sbjct 219 G-AAGCT-ACACAGGATCTACAAGAGAAGGATGAGACGAAAGAAGAGAAAGAAGGAGATG 276
Query 128 aggaagtgaaacacgacgaaacggagcaagaagaagaagaagtgatgatacccaacgaag 187
|||||||||||||||||||| ||||| |||| |||||| ||||| | ||||||||| |
Sbjct 277 AGGAAGTGAAACACGACGAAGCGGAGGAAGACCAAGAAGTAGTGA--A-ACCCAACGACG 333
Query 188 ccgacgaagaagaggaagaagatggtgacgagaaggaggaagaagaagaggaagaagaag 247
|||| ||||| || || | || | || | ||| |||||| || ||||| |||| |||||
Sbjct 334 CCGAGGAAGATGATGATGGTGACGATG-C-AGA-GGAGGACGAGGAAGAAGAAGTAGAAG 390
Query 248 cagaggaagaggaagaagaagaagaagaagaagaagaagaagaagaggaagacgaagaag 307
|||||||||| ||||||| ||| ||||| |||||||||||||| || ||||| |||||||
Sbjct 391 CAGAGGAAGATGAAGAAGCAGAGGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAG 450
Query 308 aagaagaTTCTAAA--------TC--T-T-CTATATCAAGAGACCAATCAGAATTTATGG 355
|||||||||||||| || | | ||||||| ||||||||||||| |||||||
Sbjct 451 AAGAAGATTCTAAAGAAAGAAGTCCATCTTCTATATCTGGAGACCAATCAGAGTTTATGG 510
Query 356 AAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTGTCCAATATGCCTAG 406
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTGTCCAATATGCCTAG 561
Score = 69.4 bits (37), Expect = 1e-10
Identities = 44/47 (94%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 409 ATTATAAAGAAAACAAGGACTGTGATGGAATGCCTTCACAGGTTCTG 455
|||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 595 ATTATAAAGAAAACAAGGACTGTGATGGAATGTCTCCACAG-TTCTG 640
> AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944572-947483
FORWARD LENGTH=1659
Length=1659
Score = 547 bits (296), Expect = 1e-154
Identities = 780/997 (78%), Gaps = 100/997 (10%)
Strand=Plus/Plus
Query 341 AATCAGAATTTATGGAAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTGTC-CAATA 399
||||||||| ||||| ||||||||| ||| ||| |||| |||||||| || | | |||
Sbjct 463 AATCAGAATATATGGTTGTTGATCTAGCGGATATCTGTAAGGACGTGCAATG-CTCGATA 521
Query 400 TGCCTAGGAATTATAAAGAAAACAAGGACTGTGATGGAATGCCTTCACAGGTTCTGCAGG 459
|| |||| ||||||| |||||||||||||||||||||||| || ||| |||| ||| |
Sbjct 522 TGTTTAGGGATTATAAGGAAAACAAGGACTGTGATGGAATGTCTCCACCGGTTTTGCCGA 581
Query 460 GAATGTATTGATAAGTCCATGAGATTGGGGAACAATGAATGTCCTGCTTGCAGGAAGCAT 519
|| || ||||||||||| |||||||||||||||||||| |||||| ||||||| || |||
Sbjct 582 GAGTGCATTGATAAGTCAATGAGATTGGGGAACAATGAGTGTCCTACTTGCAGAAAACAT 641
Query 520 TGTGCAAGCCGGCGTTCTCTAAGAGACGACCCAAAGTTTGATGCTCTT-ATTGCAGCTTT 578
||||||||||| |||||| |||||||||||||||| |||||||| ||| || ||||||||
Sbjct 642 TGTGCAAGCCGACGTTCTTTAAGAGACGACCCAAACTTTGATGC-CTTAATAGCAGCTTT 700
Query 579 ATTCACAAATATTTAT-AGTTATGAGGAAGAGGAACTGGCTTTTC-ACGAAGATGAAATG 636
||||| ||||||| || | || |||||| |||||| || ||||| | |||||| |||
Sbjct 701 ATTCAAAAATATTGATAAATT-TGAGGAGGAGGAATTGAATTTTCGTC-AAGATG--ATG 756
Query 637 --GCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAATATCGCAACGACAATCTGAGG 694
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 757 AAGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAGTATCGCAACGACAATCTAAGG 816
Query 695 CTCTTGTGAAAAGAC-GATCT-TTGGGTAAAGAGG-CAGCCG-TCTTAAT-GAGATCACC 749
| ||||| |||||| | ||| |||| ||||| | |||| | ||||| | ||||||||
Sbjct 817 CCCTTGTAAAAAGAAAG-TCTGTTGG-TAAAG-GCACAGC-GATCTTA-TCGAGATCAC- 870
Query 750 G-CGTATTGCTAGTAGCTCCAGAAGGAGACGGAACTGCAGAAACATGGAACAACAAAACG 808
| |||| || | | |||||||||| ||| |||||||||||||||| ||||| | | |
Sbjct 871 GACGTAGTGGTGGCGGCTCCAGAAGAAGAAGGAACTGCAGAAACATTGAACAGGATA-C- 928
Query 809 CATCAGAAGCCCATGACGATGATAATAATGATGATAATAACAACAGAGGAGGAGACAAAG 868
|||||||||| |||| |||||| ||| | || | ||| | || ||| |||||
Sbjct 929 -ATCAGAAGCCAATGATGATGAT------GATCA-AA-A-CAA-A-AG-AGG---CAAAG 972
Query 869 ATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAGAAGAAACGTAGAAAACGGTCTA 928
|||| ||||||||||||| | || ||| | | || | |||| | || || | |
Sbjct 973 ATTCTTCTTCAGATGAGCCTTGTG-AGA-G---G-CA-ACGAAA---A-AAG-CG-T-T- 1017
Query 929 CAAGTCGTTCAACACAACACCCTTCTTCTTCTGGTGCAAACAAAAACAATGGTAACTGTG 988
|| | | ||| || | | ||||||||| ||||||||| ||| || ||||| |
Sbjct 1018 CA-G-C----AACTCAGC-C--TTCTTCTTCAAATGCAAACAACAACGAT---AACTGCG 1065
Query 989 CAGATAATGACACAGA--AGT-GTAT-AGAG--ACAGCAAAGGAATATCTCCCGGGCTTG 1042
||| ||||| |||||| || | || |||| |||||| || |||||| || | |||||
Sbjct 1066 CAGGTAATGGCACAGAGCAGACGCATCAGAGGGACAGCAGAGTAATATCACCTGTGCTTG 1125
Query 1043 TGTGGAA-TCAAGAGA-TACTGGCTTGGGGAAGAGGCGGGACAAGGAGTAACACAAGACA 1100
||||||| || || | || | || |||||||||||||| ||||||||||||||||| ||
Sbjct 1126 TGTGGAACTCG-GA-ACTAATTGCATGGGGAAGAGGCGGTACAAGGAGTAACACAAGGCA 1183
Query 1101 TGGGAATAGTA-CTTCA-GGAGGTAGTAGTAAGAGTGTGAGGAATGCTCG-TGTGAACAA 1157
|| |||| || | || |||| || ||||||||| | |||||||| | |||| ||
Sbjct 1184 AGGAAATAATAAC--CAAGGAGCTATTAGTAAGAG----A--AATGCTCGCT-TGAA-AA 1233
Query 1158 G-CTTGTTGAATACCTACGTAGCAGCATAGATGG-ATCTAGCGTTGAGTTAGATATTCAT 1215
| ||||| ||||| || || | ||| |||| || | ||| || ||||| |||||||||
Sbjct 1234 GACTTGTGGAATATCT-CGG-G-AGCTTAGAGGGTAA-TAGTGTCGAGTTGGATATTCAT 1289
Query 1216 GTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCAC-AGCCATATCTCTG 1274
| ||||||||||||||||||||| || || ||| | |||||| | |||||||||| ||
Sbjct 1290 CTTAAGCTTGTCTCGCTGGATACAGAAGGTTTACTAAACTTAC-ATGAGCCATATCTTTG 1348
Query 1275 TTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAA 1311
|| ||| ||||||||||| || ||||| ||||| |||
Sbjct 1349 TTTCCGGCCCACTTTGCTAGTTAAACAACTCCGCGAA 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5