BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915797

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44270.1 | Symbols:  | TPX2 (targeting protein for Xklp2) pr...   213    2e-54


> AT5G44270.1 | Symbols:  | TPX2 (targeting protein for Xklp2) 
protein family | chr5:17833636-17835740 FORWARD LENGTH=930
Length=930

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 140/152 (92%), Gaps = 2/152 (1%)
 Strand=Plus/Plus

Query  669  AATCAAAGAGAAAGAGATGATGTACAAGAGATACCGCGAAGAGACTGAAGCCGCAAAAAT  728
            ||||||||||||||||||||||||||||||| | | ||||||| | ||||||||||||||
Sbjct  675  AATCAAAGAGAAAGAGATGATGTACAAGAGACATCTCGAAGAGGCGGAAGCCGCAAAAAT  734

Query  729  GGTAGAGGAAGAGAGAGCTCTGAAACAACTGAGAAGGACAATGGTTCCTCACGCCAGACC  788
            ||||||||||||||||||||| |||||||||||||||||||| ||||||||  |||||||
Sbjct  735  GGTAGAGGAAGAGAGAGCTCTAAAACAACTGAGAAGGACAATCGTTCCTCAAACCAGACC  794

Query  789  AGTGCCAAAC-TTCAACAACCCATTCTTACCT  819
            |||| ||||| || ||||||||||||||||||
Sbjct  795  AGTGTCAAACCTT-AACAACCCATTCTTACCT  825



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40036615159


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5