BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915804
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45530.1 | Symbols: | Protein of unknown function (DUF594) ... 1310 0.0
> AT5G45530.1 | Symbols: | Protein of unknown function (DUF594)
| chr5:18454316-18457277 REVERSE LENGTH=2452
Length=2452
Score = 1310 bits (709), Expect = 0.0
Identities = 885/972 (91%), Gaps = 4/972 (0%)
Strand=Plus/Plus
Query 492 ATCAATAAGAAGCGTGCTTAGGCAATGGTCTaaaaaaaaTCTGATGTTTCGTTACACAGT 551
|||||||||||||||||| ||||||||||||| || |||| |||| |||||| ||||||
Sbjct 1474 ATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAGAATCCGATGATTCGTTGCACAGT 1533
Query 552 TTACCCGTTATACCTTGTATTCTTTGCGGGTATTCCTGAATTTTTCAGAGTCCTTTGGAA 611
|||||||||||| || || ||||| || |||||||||||| | |||||||||||||||||
Sbjct 1534 TTACCCGTTATATCTCGTGTTCTTCGCCGGTATTCCTGAAGTATTCAGAGTCCTTTGGAA 1593
Query 612 ATACATTGATCGAATCTTTAGTGTTAAAACTTATCTAGACGAGTTTAGGTTCGTTTTGAG 671
|||||||||||||||||||||||||| | |||||||||||| | |||||||| ||| |||
Sbjct 1594 ATACATTGATCGAATCTTTAGTGTTACATCTTATCTAGACGGGATTAGGTTCATTTCGAG 1653
Query 672 AGAGCCTTTGACGAAGAATCAATGGGAATTTATATTCTATGAGTTGAAGGATAAGTCCCG 731
||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||| |
Sbjct 1654 AGAGCCTTTGACGAAGAATCAATGGGAGTTTATATTCAATGAGGTCAAGGATAAGTCGGG 1713
Query 732 TTTTGCGGAAACACCTAAAGTTGCAAAGAAACTGTCTTGGGCGAGAGGACAATGGGCTTT 791
||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1714 GTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTCTTGGGCGAGAGGAGAATGGGCTTT 1773
Query 792 ACGAGATTCGATATTGGA-GGAAATTGATACATTGATGTGTTATATAGAGAAAGTTGATT 850
||||||||||| |||| | |||| ||||||| |||||| |||| ||||||||||||||||
Sbjct 1774 ACGAGATTCGAAATTG-ATGGAAGTTGATACGTTGATGCGTTACATAGAGAAAGTTGATT 1832
Query 851 ATGATCAAAGTCTACTCCTTTGGCATATTGCTACTGAGCTCTGTTTTCAAGAAGAAGAAG 910
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1833 ATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGAGCTCTGTTTTCAAAAAGAAGAAG 1892
Query 911 GTGGGGAGATGGAGAATTTGAGCAGAGAAAGTTATGATGACCGAGAATTCAGCAAGATTA 970
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1893 GTGGGAAGATGGAGAAGCTGAGCAGAGAAGGTTATGATGACCGAGAATTCAGCAAGATTA 1952
Query 971 TATCGGATTACATGATGTATTTGTTGATAATGCGACCAAAATTGATGTCAGAAGTGTCGG 1030
||||||| ||||||||||||||||||||||||||||| || | ||||| |||||| |||
Sbjct 1953 TATCGGACTACATGATGTATTTGTTGATAATGCGACCGAAGCTAATGTCGGAAGTGGCGG 2012
Query 1031 GAATGGGGACTATACGTTTTAGATACACTAAGGCTGAAGCTGAGAGGTTTTTCAAAGGAA 1090
|||| ||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 2013 GAATCGGGACTATACGGTTTAGAGATACTAAAGCTGAAGCTGAGAGGTTTTTCAAAGGAA 2072
Query 1091 AGCATATCAAGAATCT-GAGAGATATGAAACTAGCGAGTAAGATGGTTTTATCGGTTAAT 1149
||| |||||| | || |||||||||||||| ||||||| ||| |||| ||| ||||| |
Sbjct 2073 GGCAAATCAAGGA-CTTGAGAGATATGAAACGAGCGAGTGAGACGGTTCTATTGGTTAGT 2131
Query 1150 AATGATATTGAGCCGATACTTGTGAAGGGAAATCAAAGCAAGTCGGTTCTTTTCGATGCG 1209
|| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2132 AACGATATTGAGCCGATACTTGTGAAGGGAGATCGAAGCAAGTCGGTTCTTTTCGATGCG 2191
Query 1210 AGTATGTTGGCAAAAGAGCTTCGGAATTTGAAAGAGAGTAGTAATGAAGATGGGAAATGG 1269
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2192 AGTATGTTGGCGAAAGAGCTTCAGAACTTGAAAGAGAGTAGTAATGAAGATGGGAAATGG 2251
Query 1270 AGAGTATTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCTGCAAGTCATTGTAAAGCT 1329
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2252 AGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTACGCAGCAAGTCATTGTAAAGCG 2311
Query 1330 ACGGAGCATGTGGCGCAACTTAGCAGAGGCGGTGAGCTTCTTAACTTCGTTTGGTTGTTG 1389
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2312 ACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCTTCTTAACTTTGTTTGGTTGTTG 2371
Query 1390 ATGGTTCACTTCGGTTTAGCAGATAAGTTTGAGATCAATGAAGGAGATGCTAGAGCTAAA 1449
|||| ||||||||| |||| |||| ||||| |||||||| |||| |||||||||||||||
Sbjct 2372 ATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAATAAAGGTGATGCTAGAGCTAAA 2431
Query 1450 CTCCTTGTAGGA 1461
||| ||||||||
Sbjct 2432 CTCGTTGTAGGA 2443
Score = 702 bits (380), Expect = 0.0
Identities = 455/492 (92%), Gaps = 2/492 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACATATGGAACATCAGAGGACTT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 56 ATGCAAGTGATTCCACCAGCAATAAAAAAGATATTAGACAAATGGAACATCAGAGGACTT 115
Query 61 GTGATACTGTCTCTGTTGCTT-CAAACGTCTCTTATCTTTCTTGCACCTATGCGGAAACG 119
|||||| ||||||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct 116 GTGATAATGTCTCTGTTG-TTCCAAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACG 174
Query 120 CACGTCGAAGAAGTTGCTCGCATCGGTTATATGGACCGCTTATCTTTTAGCGGATTGGAC 179
||| || |||||||||||||| ||||| ||||||| || ||||||||||||||||||||
Sbjct 175 CACATCAAAGAAGTTGCTCGCCGCGGTTCTATGGACAGCATATCTTTTAGCGGATTGGAC 234
Query 180 AGCTAATTATGTGGTATCTCAGATCACTAAGAACCAAGGGAAAGACTCAGAACCTGGCGA 239
|||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 235 CGCTAATTATGCGGTGTCTCAGATCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGA 294
Query 240 TCTTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCCTCCAAAAAACAAGAAGCTTCTTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGG 354
Query 300 TGGTCCGGACACCATAACCGCATTGGCTCTTGAGGATAATGCGTTATGGAAACGTCATTT 359
||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 355 TGGGCCGGACACGATAACCGCGTTGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTT 414
Query 360 ATTTGGCCTCGTCTTTCAAGCGCTTGCAGGTGTTTATGTGGTGGTGCAATCGTTGGAAAA 419
||||||||||||| |||||| |||||||||||||||| ||||||||||||| | |||||
Sbjct 415 GTTTGGCCTCGTCTCTCAAGCTCTTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAA 474
Query 420 CGTCTTATGGCCACCAATCACACTTTTATTCGTCACCGGAACGATTAAATATGTAGAGAG 479
||| |||||||||||||| |||||||||||| |||| ||||||||||| || || |||||
Sbjct 475 CGTATTATGGCCACCAATTACACTTTTATTCATCACAGGAACGATTAAGTACGTGGAGAG 534
Query 480 GACACGAGCATT 491
||||||||||||
Sbjct 535 GACACGAGCATT 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5